Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A08
(478 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A) ribo... 187 3e-48
At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B) 184 3e-47
At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B) 184 3e-47
At1g17340.1 68414.m02113 phosphoinositide phosphatase family pro... 35 0.025
At5g51860.1 68418.m06429 MADS-box protein (AGL72) contains Pfam ... 27 5.0
At4g30910.1 68417.m04389 cytosol aminopeptidase family protein c... 27 5.0
At4g07670.1 68417.m01203 protease-associated (PA) domain-contain... 27 5.0
At3g62080.1 68416.m06975 SNF7 family protein contains Pfam domai... 27 5.0
At3g42670.1 68416.m04437 SNF2 domain-containing protein / helica... 27 5.0
At1g53920.1 68414.m06138 GDSL-motif lipase/hydrolase family prot... 27 5.0
At5g65060.1 68418.m08183 MADS-box protein (MAF3) contains Pfam p... 27 6.6
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 27 8.7
At3g03660.1 68416.m00369 homeobox-leucine zipper transcription f... 27 8.7
At1g09280.2 68414.m01038 expressed protein contains Pfam profile... 27 8.7
At1g09280.1 68414.m01037 expressed protein contains Pfam profile... 27 8.7
>At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A)
ribosomal protein L32, human, PIR1:R5HU32
Length = 133
Score = 187 bits (456), Expect = 3e-48
Identities = 88/133 (66%), Positives = 108/133 (81%)
Frame = +1
Query: 79 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 258
MA+ P+ +VKKR+ +FIR QSDR +K +WR+P+GID+RVRR+FKG LMPN+GYG
Sbjct: 1 MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59
Query: 259 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIR 438
S+KKTRH LP+GF+K +VHN ELE+LMM NR YCAEIAH VS+KKRKAIVERA QL +
Sbjct: 60 SDKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVV 119
Query: 439 VTNAAARLRSQEN 477
VTN ARLRSQE+
Sbjct: 120 VTNRLARLRSQED 132
>At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B)
Length = 133
Score = 184 bits (448), Expect = 3e-47
Identities = 85/133 (63%), Positives = 107/133 (80%)
Frame = +1
Query: 79 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 258
MA+ P+ +VKKR+ +FIR QSDR +K +WR+P+GID+RVRR+FKG LMPN+GYG
Sbjct: 1 MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59
Query: 259 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIR 438
S+KKTRH LP+GF+K +VHN ELE+LMM NR YCAEIAH +S+KKRKAIVERA QL +
Sbjct: 60 SDKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVV 119
Query: 439 VTNAAARLRSQEN 477
V+N RLRSQE+
Sbjct: 120 VSNKLGRLRSQED 132
>At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B)
Length = 133
Score = 184 bits (448), Expect = 3e-47
Identities = 85/133 (63%), Positives = 107/133 (80%)
Frame = +1
Query: 79 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 258
MA+ P+ +VKKR+ +FIR QSDR +K +WR+P+GID+RVRR+FKG LMPN+GYG
Sbjct: 1 MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59
Query: 259 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIR 438
S+KKTRH LP+GF+K +VHN ELE+LMM NR YCAEIAH +S+KKRKAIVERA QL +
Sbjct: 60 SDKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVV 119
Query: 439 VTNAAARLRSQEN 477
V+N RLRSQE+
Sbjct: 120 VSNKLGRLRSQED 132
>At1g17340.1 68414.m02113 phosphoinositide phosphatase family
protein contains similarity to phosphoinositide
phosphatase SAC1 [Rattus norvegicus]
gi|11095248|gb|AAG29810; contains Pfam domain, PF02383:
SacI homology domain; identical to cDNA SAC domain
protein 5 (SAC5) GI:31415726
Length = 785
Score = 35.1 bits (77), Expect = 0.025
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = -3
Query: 437 LMLSCWARSTIAFRFFEETPCAISAQYFLFCIIRISSSRTLWTKTLRKPLGSM*RV 270
L S W + I + FF++T C++S + F+F II S T+ LR+ + + RV
Sbjct: 211 LQNSIWTVALI-YGFFQQTKCSVSGEKFVFTIIARRSRHYAGTRYLRRGVNDIGRV 265
>At5g51860.1 68418.m06429 MADS-box protein (AGL72) contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain);
Length = 211
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +1
Query: 292 GFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIRVTNAAARLRSQ 471
G +K +V V+++E+L + NRK + S K+ I + ++ V A+L
Sbjct: 90 GLKKEMVTMVKKIEVLEVHNRKMMGQSLDSCSVKELSEIATQIEKSLHMVRLRKAKLYED 149
Query: 472 E 474
E
Sbjct: 150 E 150
>At4g30910.1 68417.m04389 cytosol aminopeptidase family protein
contains Pfam profiles: PF00883 cytosol aminopeptidase
family catalytic domain, PF02789: cytosol aminopeptidase
family N-terminal domain
Length = 581
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 443 VTLMLSCWARSTIAFRFFEETPCAISAQYFLFCII 339
VTL+ SC + S FR F +P ++S+ + F ++
Sbjct: 3 VTLVTSCASSSRFHFRSFSSSPSSLSSCFVRFQLL 37
>At4g07670.1 68417.m01203 protease-associated (PA) domain-containing
protein similar to PF02225: PA domain; similar to
N-acetylated-alpha-linked acidic dipeptidase II
(NAALADase II) (SP:Q9Y3Q) {Homo sapiens};similar to
Glutamate carboxypeptidase II (Membrane glutamate
carboxypeptidase) (mGCP) (N-acetylated-alpha-linked
acidic dipeptidase I) (NAALADase I)
(Pteroylpoly-gamma-glutamate
carboxypeptidase)(Folylpoly-gamma-glutamate
carboxypeptidase) (FGCP) (Folate hydrolase 1)
(Prostate-specific membrane antigen homolog) (SP|O77564)
{Sus scrofa}
Length = 280
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 82 AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPR 192
A+ P ++ + +K +++H + R DKL++ KPR
Sbjct: 194 AVDPNSGTAVLMEASKSYLQHIAQRLDKLQKRGWKPR 230
>At3g62080.1 68416.m06975 SNF7 family protein contains Pfam domain,
PF03357: SNF7 family
Length = 423
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 259 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGV 384
S K L SG RKV + + REL++ + ++R+ C + + V
Sbjct: 246 SKKSALASLKSGHRKVALRHARELKV-VTESREKCTSLLNRV 286
>At3g42670.1 68416.m04437 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|P41410
DNA repair protein rhp54 (RAD54 homolog)
{Schizosaccharomyces pombe}; contains PFam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1256
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +3
Query: 321 SRTGDPDDAEQEILRGNRTWRLL-EKTEGYSRAC 419
S+ G D ++EI+ ++T R +KTEG+SR+C
Sbjct: 343 SKKGFSKDKQREIVLVDKTERKKRKKTEGFSRSC 376
>At1g53920.1 68414.m06138 GDSL-motif lipase/hydrolase family protein
similar to Anther-specific proline-rich proteins
SP|P40603 SP|P40602 from {Arabidopsis thaliana};
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase
Length = 385
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 136 IRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSN 264
+R Q D Y K++R WR G + +R + YL I GSN
Sbjct: 146 LRTQLDHYKKVERLWRTNFGKEESKKRISRAVYL---ISIGSN 185
>At5g65060.1 68418.m08183 MADS-box protein (MAF3) contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain); contains Pfam
profile PF01486: K-box region
Length = 196
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = +1
Query: 322 RELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIRVTNAAA 456
R++EI ++N K ++ SK+RK ++E+A+QLSI ++ A
Sbjct: 4 RKVEIKRIEN-KSSRQVTF---SKRRKGLIEKARQLSILCESSIA 44
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam domain
PF04931: DNA polymerase V
Length = 1306
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 301 KVLVHNVRELEILMMQNRKYCAEIAHGVSSKK 396
K LV N+ E ++ Q RK+C I VSS K
Sbjct: 1242 KELVGNMPEAKVRRAQVRKFCGRIFQMVSSLK 1273
>At3g03660.1 68416.m00369 homeobox-leucine zipper transcription
factor family protein similar to to PRESSED FLOWER
(GP:17907768) {Arabidopsis thaliana}
Length = 199
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 391 SRRRHVRFPRSISCSASSGSPVRERCGPR 305
S RH R P S + ++S PVR R P+
Sbjct: 9 SPTRHSRSPPSSASGSTSAEPVRSRWSPK 37
>At1g09280.2 68414.m01038 expressed protein contains Pfam profile:
PF03959 domain of unknown function (DUF341)
Length = 575
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = +3
Query: 309 GPQRSRTGDPDDAEQEILRGNRTWRLLEKTEGYSRACPAAQHQGDQRGR 455
G Q G+ D + G W LLE E S CP+ G Q G+
Sbjct: 477 GKQEQLVGEIDFRFCVLCSGFTPWPLLEMKEKRSIKCPSLHIFGSQPGK 525
>At1g09280.1 68414.m01037 expressed protein contains Pfam profile:
PF03959 domain of unknown function (DUF341)
Length = 581
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = +3
Query: 309 GPQRSRTGDPDDAEQEILRGNRTWRLLEKTEGYSRACPAAQHQGDQRGR 455
G Q G+ D + G W LLE E S CP+ G Q G+
Sbjct: 483 GKQEQLVGEIDFRFCVLCSGFTPWPLLEMKEKRSIKCPSLHIFGSQPGK 531
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,013,988
Number of Sequences: 28952
Number of extensions: 225893
Number of successful extensions: 705
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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