Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A07
         (326 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ...    27   0.72 
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   2.2  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    24   5.1  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    24   5.1  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    24   6.7  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    24   6.7  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    24   6.7  
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    23   8.8  

>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 282

 Score = 27.1 bits (57), Expect = 0.72
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +3

Query: 48  DAVGHLVSRAVESPRYALPAARRCIAVVEREQTETFLESLLNTCQQWYHDRE 203
           DA+ +  S+  E P + +   R+   +    QT+  ++ L+N    +Y+D E
Sbjct: 89  DAMSYYNSKLSEDPTHTVIYKRKLALLRSMGQTKECIQGLINYLDTFYNDLE 140


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 250 AISRGRPPPTIVPNNFSLS 194
           A++ G PPP++ P N  LS
Sbjct: 203 ALNAGHPPPSLYPENDDLS 221


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 148 SVCSRSTTAMQRRAAGSAYRGDSTARDTRCPTAS 47
           S   RST+  + R AG + + DS   D+  P+AS
Sbjct: 653 SAIGRSTSVREGRYAGISSQMDSLNMDSTGPSAS 686


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 39  TLMDAVGHLVSRAVESPRY 95
           T  +AV  LV RAV SP+Y
Sbjct: 206 TADEAVRELVQRAVNSPKY 224


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 169 SKDSRKVSVCSRSTTAMQRRAAGSAYRGDSTARDTRCPT 53
           S  S+  +VC R   A QRR    ++ G    +D  C T
Sbjct: 10  SPSSKGSTVCFRCGQAFQRRETPISFGGHMWHKDCFCCT 48


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +3

Query: 6   RLEDPNAVCARTLMDAVGHLVSRAVESP 89
           RLEDP+  C   + D +  ++++ ++ P
Sbjct: 433 RLEDPSLKCVSLIYDELVRILNQLLQRP 460


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = +3

Query: 147  ETFLESLLNTCQQWYHDRE------KLLGTMVGGGRPRLMAFLSFLLEMYC 281
            + FL  L  + Q WYH+        KL  T+ GG + + +   +FL+E  C
Sbjct: 1333 DRFLNLLGASAQSWYHEMPKPRTSLKLTETVKGGIQKKTLD--TFLMEKLC 1381


>SPCC417.11c |||glutamate-1-semialdehyde
           2,1-aminomutaseaminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 435

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 108 ARRCIAVVEREQTETFLESLLNTCQQWYHDREKLL 212
           ARR +  +    TE+ LE+   T + W H R  L+
Sbjct: 399 ARRGMITLSLVLTESELEAFKLTIKAWIHRRMSLI 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 950,546
Number of Sequences: 5004
Number of extensions: 14056
Number of successful extensions: 53
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)