Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A07
(326 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0604 + 19903654-19904598 28 2.0
12_02_0837 - 23554013-23554771 27 2.6
05_07_0081 - 27572047-27572925,27573285-27573419 27 3.5
04_04_1406 + 33340509-33340681,33342737-33342839,33342931-333431... 27 3.5
11_03_0093 - 9852075-9852871,9852911-9853009,9853208-9853646,985... 27 4.6
10_08_1000 + 22130210-22130300,22130412-22130683,22130780-221309... 27 4.6
09_04_0620 - 19011828-19011896,19012015-19012387,19013158-19013486 27 4.6
07_03_0616 + 19988392-19988734,19988755-19988891,19989021-199892... 27 4.6
06_01_0399 - 2860692-2861241,2861330-2862171 27 4.6
04_04_0905 - 29290998-29291486 27 4.6
10_08_0600 - 19098312-19099439 26 6.1
08_01_0779 - 7553278-7553631,7553765-7553977,7554132-7554617,755... 26 6.1
08_01_0315 - 2780657-2780704,2781555-2781608,2781826-2781976,278... 26 6.1
07_03_1506 - 27161056-27161454 26 6.1
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 26 6.1
12_02_0180 - 14977508-14977648,14978071-14978283 26 8.0
08_02_0782 - 21164425-21164558,21164652-21165067,21165160-21165344 26 8.0
03_01_0172 + 1403822-1404109 26 8.0
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 26 8.0
01_03_0105 + 12604125-12604583 26 8.0
>07_03_0604 + 19903654-19904598
Length = 314
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 113 PRGRQRVPRRLDGARHEVPHRVHQR 39
P GR+R PRR++GA R+H R
Sbjct: 80 PGGRRRRPRRVEGAPVHRARRLHHR 104
>12_02_0837 - 23554013-23554771
Length = 252
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 274 ISNRNERNAISRGRPPPTI-VPNNFSLSWYHCWHVLS 167
+++ +R A P T +P NF++ +H WH L+
Sbjct: 88 VADERQREAPLAFAPTTTAYIPTNFAILAHHAWHTLT 124
>05_07_0081 - 27572047-27572925,27573285-27573419
Length = 337
Score = 27.1 bits (57), Expect = 3.5
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Frame = -2
Query: 241 RGRPPPTIVPNNFSLSWYHCWHVLSKDSRKVSVCSRSTTAMQRRAAG------SAYRGDS 80
R RPP +VPN+ S + HV + S++A R A S+Y G
Sbjct: 91 RRRPPADMVPNDRERSRHGLAHVRGVARVPTTTAMSSSSARVRAGASASSRWPSSYPGLP 150
Query: 79 TARDTRCPTASISVRAHTA 23
D + P R H A
Sbjct: 151 PRHDGQAPIPQAHTRPHRA 169
>04_04_1406 +
33340509-33340681,33342737-33342839,33342931-33343156,
33343270-33343327,33343639-33343729
Length = 216
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 132 EREQTETFLESLLNTCQQWYHDREKLLGTMVGGGRPRLMAFLS 260
ER++ E +E + QQ E+L+G + GGRP++ S
Sbjct: 25 ERKEEEVVVEEKSHQ-QQQQQGEEELVGLSLAGGRPKVFPMSS 66
>11_03_0093 -
9852075-9852871,9852911-9853009,9853208-9853646,
9853803-9854129
Length = 553
Score = 26.6 bits (56), Expect = 4.6
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 73 RDTRCPTASISVRAH 29
+D RCPT + S+RAH
Sbjct: 402 KDPRCPTITCSIRAH 416
>10_08_1000 +
22130210-22130300,22130412-22130683,22130780-22130915,
22131228-22131361,22131550-22131655,22131829-22131914,
22132304-22132492,22132580-22132738,22133083-22133196,
22133483-22133734
Length = 512
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +2
Query: 176 VPAVVPRQGEVVGDNGGRRSAAADG 250
+PA P E NGG SAAADG
Sbjct: 22 LPADNPADPEAAAANGGADSAAADG 46
>09_04_0620 - 19011828-19011896,19012015-19012387,19013158-19013486
Length = 256
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 212 GDNGGRRSAAADGVPLVP 265
G NGGRR +AA +PL P
Sbjct: 205 GKNGGRRESAAPPLPLPP 222
>07_03_0616 +
19988392-19988734,19988755-19988891,19989021-19989231,
19989372-19989455,19989540-19989727,19989873-19990193
Length = 427
Score = 26.6 bits (56), Expect = 4.6
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 60 HLVSRAVESPRYALPAARRCIAVVEREQTETFLESLL-NTCQQWYHDREKLLG 215
HLV+R + Y LP+ ++ QT + L +L NT QWY DR K G
Sbjct: 22 HLVTRR-KYASYNLPSGSLGFPLIG--QTISLLRALRKNTDYQWYQDRIKKYG 71
>06_01_0399 - 2860692-2861241,2861330-2862171
Length = 463
Score = 26.6 bits (56), Expect = 4.6
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 188 VPRQGEVVGDNGGRRSAAADGVPLV-PVGDVLSVAQTHDTAP 310
VP G + GD G +AAD VPLV D +SVA +P
Sbjct: 79 VPLAGRI-GDGGRVVWSAADAVPLVLAAADDVSVADVDTDSP 119
>04_04_0905 - 29290998-29291486
Length = 162
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 173 HVPAVVPRQGEVVGDNGGRRSAAADGVPLVPVGDVLSV-AQTHD 301
H P + R+ + +GD+G + A G+PLV + + A HD
Sbjct: 49 HAPLIHGRRRDPLGDDGLQPEAVKRGLPLVEYMQLADLSADCHD 92
>10_08_0600 - 19098312-19099439
Length = 375
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 92 PRRLDGARHEVPHRVHQRTSAHSVRIFKPR 3
P L G +P R+H+R + H +R+F PR
Sbjct: 56 PLALPGLARRLPLRLHRRGALHFLRLF-PR 84
>08_01_0779 -
7553278-7553631,7553765-7553977,7554132-7554617,
7554729-7554796,7554918-7555215,7555288-7555364,
7555703-7555874,7555951-7556021,7557371-7557392
Length = 586
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 185 VVPRQGEVVGDNGGRRSAAADGV 253
++P Q E+VG+N +SAA + +
Sbjct: 10 MIPPQSEIVGENNASKSAAKEQI 32
>08_01_0315 -
2780657-2780704,2781555-2781608,2781826-2781976,
2782650-2782888,2783141-2783272,2783594-2783658,
2784289-2784377,2784664-2784902
Length = 338
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 6 RLEDPNAVCARTLMDAVGHLVSRAVESPRYALPAARRCIAVVERE 140
R DP +C L + +G L + V Y+L A A ER+
Sbjct: 153 RFYDPKTICFEDLSEELGVLCPKQVRYLLYSLALATYVTAARERQ 197
>07_03_1506 - 27161056-27161454
Length = 132
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 185 VVPRQGEVVGDNGGRRSAAADG 250
V PR+ EV GD+GG DG
Sbjct: 81 VTPRREEVRGDDGGEPKLGGDG 102
>01_07_0290 -
42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 141 QTETFLESLLNTCQQWYHDREKLLGTM 221
Q ET ++S+L+ CQ+ + + K G+M
Sbjct: 914 QIETIMDSVLHKCQETFRNNIKKKGSM 940
>12_02_0180 - 14977508-14977648,14978071-14978283
Length = 117
Score = 25.8 bits (54), Expect = 8.0
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +2
Query: 179 PAVVPRQGEVVGDNGGRRSAAADGVP--LVPVGDVLSVAQTHDTAPR 313
PAV G +GG R AA P L P D +VA A R
Sbjct: 19 PAVAAASAAAAGGSGGGRRQAAPSAPSRLPPTADPATVAALAAAAGR 65
>08_02_0782 - 21164425-21164558,21164652-21165067,21165160-21165344
Length = 244
Score = 25.8 bits (54), Expect = 8.0
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -2
Query: 148 SVCSRSTTAMQRRAAG--SAYRGDSTARDTRCPTASISVRA 32
SV +R+ A R +A S + G S+ R R PT +VRA
Sbjct: 3 SVTARTPVAALRSSASLKSTFLGQSSTRLARAPTTRRNVRA 43
>03_01_0172 + 1403822-1404109
Length = 95
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 92 PRRLDGARHEVPHRVHQRTSAHSVRIFKPR 3
P L H +P R+H+R + H +R+F PR
Sbjct: 8 PLTLPCLAHRLPLRLHRRGALHFLRLF-PR 36
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 162 SLLNTCQQWYHDREKLLGTMV 224
S ++ CQQ HDR K++ T+V
Sbjct: 1506 SAVSDCQQLCHDRLKMVNTLV 1526
>01_03_0105 + 12604125-12604583
Length = 152
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -1
Query: 113 PRGRQRVPRRLDGARHEVPHRVHQRTSAHSVRIFKP 6
PR + R+ R+DG + E H ++ S KP
Sbjct: 75 PRAKLRLVGRIDGRKEEAAHHSRRQPSLQKEAAAKP 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,559,825
Number of Sequences: 37544
Number of extensions: 130816
Number of successful extensions: 659
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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