Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A07
         (326 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32309| Best HMM Match : C1_3 (HMM E-Value=7.3)                      30   0.51 
SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)               29   0.68 
SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)                       28   1.6  
SB_12582| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.7  
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   27   3.6  
SB_21035| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.6  
SB_1555| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.8  
SB_25790| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.3  

>SB_32309| Best HMM Match : C1_3 (HMM E-Value=7.3)
          Length = 193

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 22/68 (32%), Positives = 36/68 (52%)
 Frame = +3

Query: 9   LEDPNAVCARTLMDAVGHLVSRAVESPRYALPAARRCIAVVEREQTETFLESLLNTCQQW 188
           LE   AV A+  +    +L ++A++    AL   RR  + VE  +TE  L+ + NTC  +
Sbjct: 25  LERQAAVSAK--VSGAAYLHTKALKLQLAALHGLRRLCSQVEVGETE--LDRVCNTCTLY 80

Query: 189 YHDREKLL 212
             DR+ L+
Sbjct: 81  LSDRQPLV 88


>SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)
          Length = 1724

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +3

Query: 3    TRLEDPNAVCARTLMDAVGHLVSRAVESPRYALPAARRCIAVVEREQTETFLESLL 170
            T++   +A+     MD   H      +  + A+PA    +A+V + +T+TF  S +
Sbjct: 950  TKISVDDAITEHVTMDVYAHPAFHPRDPYKSAVPAVAFTLALVNKHKTDTFRASFM 1005


>SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)
          Length = 323

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/45 (22%), Positives = 26/45 (57%)
 Frame = -2

Query: 208 NFSLSWYHCWHVLSKDSRKVSVCSRSTTAMQRRAAGSAYRGDSTA 74
           N +++  HCW +L+++S  + +   ++++    AA S+    S++
Sbjct: 161 NCAMTCQHCWRILARNSTVIIIIIITSSSSSSAAAASSSSSSSSS 205


>SB_12582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +3

Query: 84  SPRYALPAARRCIAVVEREQTETFLESLLNTCQQWYHDREKLL 212
           SP+  +P  R C    ++E++ET  + ++   Q   H R++++
Sbjct: 91  SPQINVPYERHCFRQTKQEESETVDQIVIRPSQMAEHIRDQMI 133


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 150  TFLESLLNTCQQWYHDREKLLGTMVGGGRPRLMAFLSFLLEMYCQL 287
            T  ++     + +YHDREKL+ T +   +  + A +S   E+  QL
Sbjct: 4897 TLYQTQRTALKAYYHDREKLI-TQISNEKGEMQAKISQFQELVKQL 4941


>SB_21035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/46 (26%), Positives = 17/46 (36%)
 Frame = +3

Query: 171 NTCQQWYHDREKLLGTMVGGGRPRLMAFLSFLLEMYCQLRRRTIQR 308
           N C +W+      L  +  G R      LSF    +C  +R    R
Sbjct: 25  NWCSKWWSGNRFSLSQLARGARMSRYGLLSFTSARFCNRKREGFMR 70


>SB_1555| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 147 ETFLESLLNTCQQWYHD 197
           +TF   LL  C+ WYHD
Sbjct: 39  KTFYVLLLRACELWYHD 55


>SB_25790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 228 GGRPRLMAFLSFLLEMYCQLRRRTIQRR 311
           G RP L  +     E YC  R RTI+ +
Sbjct: 62  GNRPHLQGYFYDFTESYCNERGRTIRSK 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,020,456
Number of Sequences: 59808
Number of extensions: 127692
Number of successful extensions: 393
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 450550116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)