Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A07
         (326 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41535-2|AAB63402.1|  731|Caenorhabditis elegans Hypothetical pr...    27   2.4  
U41535-1|AAK67247.1|  734|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z19158-1|CAA79574.1|  788|Caenorhabditis elegans Hypothetical pr...    27   4.2  
AF408761-1|AAO27840.1|  741|Caenorhabditis elegans Rap1GAP protein.    27   4.2  
AF022971-7|AAG23973.2|  226|Caenorhabditis elegans Hypothetical ...    27   4.2  
AF016660-1|AAK71368.1|  742|Caenorhabditis elegans Hypothetical ...    27   4.2  
AF099919-4|AAC68791.1|  230|Caenorhabditis elegans Hypothetical ...    26   5.6  
U23448-8|AAL27226.1|  849|Caenorhabditis elegans Dnaj domain (pr...    26   7.4  
U23448-7|AAM81128.1|  868|Caenorhabditis elegans Dnaj domain (pr...    26   7.4  
U23448-6|AAL27225.1|  915|Caenorhabditis elegans Dnaj domain (pr...    26   7.4  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    25   9.7  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    25   9.7  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    25   9.7  

>U41535-2|AAB63402.1|  731|Caenorhabditis elegans Hypothetical
           protein F18A1.6a protein.
          Length = 731

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +3

Query: 63  LVSRAVESP-RYALPAARRCIAVVEREQTETFLESLL--NTCQQWYHDREKLLGTMVGGG 233
           L  + + SP R+ L AA       +   T T+  S L  +  Q+WY DR      MVG  
Sbjct: 369 LQHKMIVSPSRHLLVAAFIFSVQTKSGSTITYAISFLMSHLKQEWYLDRHSWFERMVGDS 428

Query: 234 RPRLMAFL 257
            P++ A L
Sbjct: 429 VPKMKASL 436


>U41535-1|AAK67247.1|  734|Caenorhabditis elegans Hypothetical
           protein F18A1.6b protein.
          Length = 734

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +3

Query: 63  LVSRAVESP-RYALPAARRCIAVVEREQTETFLESLL--NTCQQWYHDREKLLGTMVGGG 233
           L  + + SP R+ L AA       +   T T+  S L  +  Q+WY DR      MVG  
Sbjct: 372 LQHKMIVSPSRHLLVAAFIFSVQTKSGSTITYAISFLMSHLKQEWYLDRHSWFERMVGDS 431

Query: 234 RPRLMAFL 257
            P++ A L
Sbjct: 432 VPKMKASL 439


>Z19158-1|CAA79574.1|  788|Caenorhabditis elegans Hypothetical
           protein T23G5.1 protein.
          Length = 788

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 69  SRAVESPRYALPAARRCIAVVEREQTETFLESLLNTCQQWYH 194
           S   + P YAL AAR  ++ + ++  + F E ++ T  +++H
Sbjct: 72  SMTTQHPEYALLAARIAVSNLHKKTNKVFSE-VMKTLHEFHH 112


>AF408761-1|AAO27840.1|  741|Caenorhabditis elegans Rap1GAP protein.
          Length = 741

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 86  RLDGARHEVPHRVHQRTSAH 27
           RLD  R E+P R H  TS H
Sbjct: 92  RLDDQRCEMPERTHNPTSGH 111


>AF022971-7|AAG23973.2|  226|Caenorhabditis elegans Hypothetical
           protein C31B8.2 protein.
          Length = 226

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 247 ISRGRPPPTIVPNNFSLSWYHCWHVLSKDSRKVSVCSRSTT 125
           ++ G+P   + PN  +++W  C  V  KD+  V +   S T
Sbjct: 28  VTWGKPLKILNPNILNITWEECIDVCWKDTSCVLIYDTSPT 68


>AF016660-1|AAK71368.1|  742|Caenorhabditis elegans Hypothetical
           protein F53A10.2a protein.
          Length = 742

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 86  RLDGARHEVPHRVHQRTSAH 27
           RLD  R E+P R H  TS H
Sbjct: 93  RLDDQRCEMPERTHNPTSGH 112


>AF099919-4|AAC68791.1|  230|Caenorhabditis elegans Hypothetical
           protein F40G9.12 protein.
          Length = 230

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = -2

Query: 265 RNERNAISRGRPPPTIVPNNFSLSWYHCWHVLSKDSRKVSVCSRSTTAMQ 116
           R +   I  GRP   I   N+  S  HC  VLS       +C +   +++
Sbjct: 6   RTQEMYIDDGRPECKICYKNYETSGDHCPRVLSCGHTYCEICIQELASLR 55


>U23448-8|AAL27226.1|  849|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 5, isoform b
           protein.
          Length = 849

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -1

Query: 113 PRGRQRVPRRLDGARHEVPHRVHQRTSAHSVRI 15
           P    RVP       H   H +H  T  H+V++
Sbjct: 129 PSTPSRVPHHPSSQVHHFHHNLHHHTHTHNVQV 161


>U23448-7|AAM81128.1|  868|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 5, isoform d
           protein.
          Length = 868

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -1

Query: 113 PRGRQRVPRRLDGARHEVPHRVHQRTSAHSVRI 15
           P    RVP       H   H +H  T  H+V++
Sbjct: 129 PSTPSRVPHHPSSQVHHFHHNLHHHTHTHNVQV 161


>U23448-6|AAL27225.1|  915|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 5, isoform a
           protein.
          Length = 915

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -1

Query: 113 PRGRQRVPRRLDGARHEVPHRVHQRTSAHSVRI 15
           P    RVP       H   H +H  T  H+V++
Sbjct: 129 PSTPSRVPHHPSSQVHHFHHNLHHHTHTHNVQV 161


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical protein
             K07E12.1b protein.
          Length = 12268

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 200   GEVVGDNGGRRSAAADGVPLVPVGDVL 280
             G  V D+G   S  +DG PL P G VL
Sbjct: 11996 GSFVTDDGTVVSKDSDGKPLGPAGQVL 12022


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
             K07E12.1a protein.
          Length = 13100

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 200   GEVVGDNGGRRSAAADGVPLVPVGDVL 280
             G  V D+G   S  +DG PL P G VL
Sbjct: 12041 GSFVTDDGTVVSKDSDGKPLGPAGQVL 12067


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
          Length = 13100

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 200   GEVVGDNGGRRSAAADGVPLVPVGDVL 280
             G  V D+G   S  +DG PL P G VL
Sbjct: 12041 GSFVTDDGTVVSKDSDGKPLGPAGQVL 12067


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,661,669
Number of Sequences: 27780
Number of extensions: 88036
Number of successful extensions: 438
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)