Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A06
         (511 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)                191   2e-49
SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)             30   1.3  
SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_30815| Best HMM Match : Sas10_Utp3 (HMM E-Value=1)                  27   6.8  
SB_9191| Best HMM Match : TolA (HMM E-Value=1)                         27   6.8  
SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)                       27   9.0  
SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)             27   9.0  
SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12)                   27   9.0  
SB_4255| Best HMM Match : rve (HMM E-Value=1.4e-38)                    27   9.0  

>SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)
          Length = 166

 Score =  191 bits (466), Expect = 2e-49
 Identities = 97/158 (61%), Positives = 113/158 (71%), Gaps = 4/158 (2%)
 Frame = +2

Query: 35  MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 214
           ML+PK+NRV IYEYLFKEGV VAKKD+++PKH  +E +PNL VIKA+QSLKSRGYV+E+F
Sbjct: 1   MLIPKKNRVIIYEYLFKEGVCVAKKDFNSPKHTQIENVPNLHVIKALQSLKSRGYVEEKF 60

Query: 215 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSV-RTETVRRGAVGR--PDAPARTAE 385
            W+H+YW LTNEGI YLR FLHLP EIVPATL+R V R ET R    G   P  P    +
Sbjct: 61  CWKHYYWNLTNEGITYLRDFLHLPTEIVPATLRRQVTRAETARPRPKGMDGPRGPGEGGD 120

Query: 386 -DRSAYRRAPPAGAPHDKKADVGPGSADVEFRGGFGRG 496
            DR +YRR PP G   + K   G G    EFR GFGRG
Sbjct: 121 RDRESYRRGPPPGV--EGKGGAGSGFKP-EFRQGFGRG 155


>SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)
          Length = 1086

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
 Frame = -2

Query: 498 RPLP-KPPLNSTSAEPGPTSAFLSXXXXXXXXXXXADLSSAVRAGASGLPTAPRRTVSVR 322
           RP P + P  S+ A P    A                 +SA+  GAS    A   +VS  
Sbjct: 707 RPQPAQQPAQSSGATPLEAQAEAPTVSTTTCGAAATKTTSAISQGASTSLQATTHSVSSP 766

Query: 321 TDLFRVAGTISGGKCRKILRYSIPS 247
           T++    G  S       +RY++PS
Sbjct: 767 TNVTTQDGATSRQCTTATVRYTVPS 791


>SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = +2

Query: 263 LRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKA 442
           L  F+H  PE      +R  R+    R   GR ++ + T E RSA +      AP D   
Sbjct: 146 LPTFIHNEPETTTNNKRRMHRSLKFFRRPFGRTESNSDTDEARSARKTVHFKDAPMD-LT 204

Query: 443 DVGP 454
           D+ P
Sbjct: 205 DINP 208


>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1414

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = +2

Query: 356 RPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFRGGFGRGRSAP 508
           RP+ P RT E     R + P G  + ++    P         G  RGRS P
Sbjct: 679 RPERPDRTGERGREPRYSTPQGPDYHRRPSPSPPGPPRNAPYGPPRGRSPP 729



 Score = 27.5 bits (58), Expect = 6.8
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = +2

Query: 275  LHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGP 454
            LH P E   ATL  ++RT   +  A G+     +  ++     R+P  G   D+ ADV  
Sbjct: 967  LHPPNE---ATLPPTLRTTPQKSPAPGKEGKKVKKKKEGKKSGRSPREGVVTDEGADVDM 1023

Query: 455  GSADVEFR 478
            G    E +
Sbjct: 1024 GLGGEEVK 1031


>SB_30815| Best HMM Match : Sas10_Utp3 (HMM E-Value=1)
          Length = 864

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -3

Query: 389 YLQLFVLEHQACQLHHDVLSLYALTSSGLLVQF--QEVSAGKF*GIQYPHLLNTSKN 225
           +LQL V+ H A +++H +L + + T  G L  F  Q +   +F  ++   L N+  N
Sbjct: 509 FLQLIVVAHDALRVYHQILGI-SHTPGGELTLFFEQPIRRPRFVALRQCSLFNSWYN 564


>SB_9191| Best HMM Match : TolA (HMM E-Value=1)
          Length = 541

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = +2

Query: 275 LHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGP 454
           LH P E   ATL  ++RT   +  A G+     +  ++     R+P  G   D+ ADV  
Sbjct: 157 LHPPNE---ATLPPTLRTTPQKSPAPGKEGKKVKKKKEGKKSGRSPREGVVTDEGADVDM 213

Query: 455 GSADVEFR 478
           G    E +
Sbjct: 214 GLGGEEVK 221


>SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)
          Length = 1014

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 354 PTAPRRTVSVRTDLFRVAGTISGG 283
           P    RTV++  D+F  AGT++GG
Sbjct: 464 PKVKTRTVTLEGDVFDPAGTLTGG 487


>SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)
          Length = 578

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/60 (25%), Positives = 32/60 (53%)
 Frame = +2

Query: 146 IPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 325
           I  +  ++ +  + SRG+VK+ +A+    W   +  + +L  +L L P+I   +  R++R
Sbjct: 129 ITAIYTLEMICKIISRGFVKDSYAYLRDTWNWLDSLVVFLS-YLSLAPDIASLSGIRTLR 187


>SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12)
          Length = 515

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 317 SVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDK-KADV 448
           S     ++   +G  +AP+   +D  AY   PP   P DK K+D+
Sbjct: 91  STENNVIKEDVIGPTNAPS---DDNDAYPTMPPDEEPKDKHKSDI 132


>SB_4255| Best HMM Match : rve (HMM E-Value=1.4e-38)
          Length = 899

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 9/33 (27%), Positives = 23/33 (69%)
 Frame = +2

Query: 17  ESWLSKMLMPKQNRVSIYEYLFKEGVMVAKKDY 115
           E W++  L+ ++NR+ + E L+K+ +++A + +
Sbjct: 491 ELWIAGQLVMRRNRIVLPESLWKQAIILAHEGH 523


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,470,497
Number of Sequences: 59808
Number of extensions: 298123
Number of successful extensions: 1019
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)