Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A06
         (511 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal pr...   149   9e-37
Z50863-3|CAA90735.1|  830|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81092-1|CAB03144.1|  143|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z75525-3|CAA99762.3|  245|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AL132952-24|CAB61143.2|  351|Caenorhabditis elegans Hypothetical...    27   6.0  
Z71181-9|CAD44140.1|  960|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z71178-18|CAH04640.1|  671|Caenorhabditis elegans Hypothetical p...    27   7.9  
Z71178-17|CAD44089.1|  898|Caenorhabditis elegans Hypothetical p...    27   7.9  
Z71178-15|CAD44087.1|  960|Caenorhabditis elegans Hypothetical p...    27   7.9  
Z71178-14|CAA94886.3|  894|Caenorhabditis elegans Hypothetical p...    27   7.9  
AL021478-4|CAJ26240.1|  671|Caenorhabditis elegans Hypothetical ...    27   7.9  
AL021478-3|CAF32233.1|  898|Caenorhabditis elegans Hypothetical ...    27   7.9  
AL021478-1|CAC35857.2|  894|Caenorhabditis elegans Hypothetical ...    27   7.9  

>AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 10 protein.
          Length = 149

 Score =  149 bits (362), Expect = 9e-37
 Identities = 81/158 (51%), Positives = 98/158 (62%)
 Frame = +2

Query: 35  MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 214
           M +PK +   IYEYLF EGV VAKKD++A  HP++E + NL+VIK ++SL SR  VKEQF
Sbjct: 1   MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60

Query: 215 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 394
           AWRH+YWYLT+ GI YLR +L LP EIVPAT+K   R   V       P A      DR 
Sbjct: 61  AWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPH-EDRAPRAAQGEKGDRE 119

Query: 395 AYRRAPPAGAPHDKKADVGPGSADVEFRGGFGRGRSAP 508
           AYR         +K  + GPG A V +R GFGRG   P
Sbjct: 120 AYRT--------EKVTEAGPGGAPV-YRAGFGRGAPPP 148


>Z50863-3|CAA90735.1|  830|Caenorhabditis elegans Hypothetical
           protein C14H10.3 protein.
          Length = 830

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 136 IWMFGCMVVFLSYHDSLLEEVLIDRNTVLFWHQHLGQPTFH 14
           +W F C+ V +S      + +L+ R    F+ QH+ +P  H
Sbjct: 10  LWAFACLSVSISRRSEKGKCMLVPRERRHFFVQHVSRPHIH 50


>Z81092-1|CAB03144.1|  143|Caenorhabditis elegans Hypothetical
           protein F58D12.1 protein.
          Length = 143

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 504 ADRPLPKPPLNSTSAEPGPTSA 439
           +DRP P+PP +S S+ P P SA
Sbjct: 45  SDRP-PRPPSSSASSSPAPGSA 65


>Z75525-3|CAA99762.3|  245|Caenorhabditis elegans Hypothetical
           protein C03D6.5 protein.
          Length = 245

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 18/72 (25%), Positives = 34/72 (47%)
 Frame = +2

Query: 125 KHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPA 304
           +HPD+ KIP   ++     L    Y  ++F   +  W++ NE  +   +  + P + +  
Sbjct: 78  EHPDISKIPVEDIVGVSVLLLRCKYNDQEFI--NMGWFVANEYTDE-ELKENPPAKPLIE 134

Query: 305 TLKRSVRTETVR 340
            L R + TE +R
Sbjct: 135 KLSRKIETEDLR 146


>AL132952-24|CAB61143.2|  351|Caenorhabditis elegans Hypothetical
           protein Y51H4A.9 protein.
          Length = 351

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/49 (34%), Positives = 19/49 (38%)
 Frame = +2

Query: 344 GAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFRGGFG 490
           G VG P AP +  +   A   A P G P    A   PG A     G  G
Sbjct: 259 GNVGAPGAPGQVVDVPGAPGPAGPPGPPGPSGAPGHPGQAGSSLPGAPG 307


>Z71181-9|CAD44140.1|  960|Caenorhabditis elegans Hypothetical
           protein B0024.14b protein.
          Length = 960

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 15  WKVGCPRC*CQNKTVFLSMSTSSRRES 95
           W  GC  C C+NK  F S+ +   + S
Sbjct: 534 WSDGCRHCFCENKQEFCSLISCPTKPS 560


>Z71178-18|CAH04640.1|  671|Caenorhabditis elegans Hypothetical
           protein B0024.14e protein.
          Length = 671

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 15  WKVGCPRC*CQNKTVFLSMSTSSRRES 95
           W  GC  C C+NK  F S+ +   + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494


>Z71178-17|CAD44089.1|  898|Caenorhabditis elegans Hypothetical
           protein B0024.14d protein.
          Length = 898

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 15  WKVGCPRC*CQNKTVFLSMSTSSRRES 95
           W  GC  C C+NK  F S+ +   + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494


>Z71178-15|CAD44087.1|  960|Caenorhabditis elegans Hypothetical
           protein B0024.14b protein.
          Length = 960

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 15  WKVGCPRC*CQNKTVFLSMSTSSRRES 95
           W  GC  C C+NK  F S+ +   + S
Sbjct: 534 WSDGCRHCFCENKQEFCSLISCPTKPS 560


>Z71178-14|CAA94886.3|  894|Caenorhabditis elegans Hypothetical
           protein B0024.14a protein.
          Length = 894

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 15  WKVGCPRC*CQNKTVFLSMSTSSRRES 95
           W  GC  C C+NK  F S+ +   + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494


>AL021478-4|CAJ26240.1|  671|Caenorhabditis elegans Hypothetical
           protein B0024.14e protein.
          Length = 671

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 15  WKVGCPRC*CQNKTVFLSMSTSSRRES 95
           W  GC  C C+NK  F S+ +   + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494


>AL021478-3|CAF32233.1|  898|Caenorhabditis elegans Hypothetical
           protein B0024.14d protein.
          Length = 898

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 15  WKVGCPRC*CQNKTVFLSMSTSSRRES 95
           W  GC  C C+NK  F S+ +   + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494


>AL021478-1|CAC35857.2|  894|Caenorhabditis elegans Hypothetical
           protein B0024.14a protein.
          Length = 894

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 15  WKVGCPRC*CQNKTVFLSMSTSSRRES 95
           W  GC  C C+NK  F S+ +   + S
Sbjct: 468 WSDGCRHCFCENKQEFCSLISCPTKPS 494


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,479,581
Number of Sequences: 27780
Number of extensions: 232412
Number of successful extensions: 888
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)