Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A06
         (511 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    24   1.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   1.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   1.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   1.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   3.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   7.4  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -1

Query: 142 LEIWMFGCMV-VFLSYHDSLLEEVL 71
           L++WM GCM+ VF +  + ++ +VL
Sbjct: 262 LDVWMAGCMMFVFAALGEFVVVKVL 286


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 37  VDAKTKPCFYL*VPLQG 87
           +DA TKPC +   P QG
Sbjct: 294 IDANTKPCTWAARPWQG 310


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 37  VDAKTKPCFYL*VPLQG 87
           +DA TKPC +   P QG
Sbjct: 294 IDANTKPCTWAARPWQG 310


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 37  VDAKTKPCFYL*VPLQG 87
           +DA TKPC +   P QG
Sbjct: 294 IDANTKPCTWAARPWQG 310


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 306 VAGTISGGKCRKILRYSIPSFVK 238
           V G  S G C  +LR  +PSFVK
Sbjct: 138 VIGGASRG-CTAVLRCVVPSFVK 159


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 306 VAGTISGGKCRKILRYSIPSFVK 238
           V G  S G C  +LR  +PSFVK
Sbjct: 138 VIGGASRG-CTAVLRCVVPSFVK 159


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +2

Query: 107 KDYHAPKHPDLEKI--PNLQVIKAMQSLKSRGYVKEQ 211
           KD   P    + KI  PN+ +IK    L   G V E+
Sbjct: 242 KDAKVPIIVAINKIDKPNIDIIKVQYELAKHGIVIEE 278


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 13  SGKLVVQDVDAKTKPCFY 66
           SG+++++ V  K K C+Y
Sbjct: 373 SGRVLMRTVRGKEKTCYY 390


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 13  SGKLVVQDVDAKTKPCFY 66
           SG+++++ V  K K C+Y
Sbjct: 373 SGRVLMRTVRGKEKTCYY 390


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 275 LHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAE 385
           L  P    P T+++ +R   +RR     PD    TA+
Sbjct: 156 LPTPVTPTPTTVQQLLRRAQIRRNERRTPDPHDETAK 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,310
Number of Sequences: 438
Number of extensions: 2802
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)