Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A06
(511 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont... 155 1e-38
At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ... 142 9e-35
At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont... 140 5e-34
At3g49650.1 68416.m05426 kinesin motor protein-related several k... 29 1.8
At5g36210.1 68418.m04365 expressed protein 28 4.2
At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin... 28 4.2
At3g46940.1 68416.m05095 deoxyuridine 5'-triphosphate nucleotido... 27 7.3
At3g21220.1 68416.m02682 mitogen-activated protein kinase kinase... 27 7.3
At1g16370.1 68414.m01958 transporter-related low similarity to o... 27 7.3
At1g16010.1 68414.m01920 magnesium transporter CorA-like family ... 27 7.3
At4g08470.1 68417.m01398 mitogen-activated protein kinase, putat... 27 9.7
At3g09400.1 68416.m01116 protein phosphatase 2C family protein /... 27 9.7
At2g21380.1 68415.m02544 kinesin motor protein-related 27 9.7
At2g18870.1 68415.m02200 hypothetical protein contains 1 transme... 27 9.7
>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
contains similarity to 40S ribosomal protein S10
Length = 180
Score = 155 bits (377), Expect = 1e-38
Identities = 80/161 (49%), Positives = 102/161 (63%), Gaps = 6/161 (3%)
Frame = +2
Query: 35 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 214
M++ + NR I +YLFKEGV+ AKKD++ P+HP +E +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60
Query: 215 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVG-RPDAP-----AR 376
AW H+YW+LTNEGI++LR +L+LP EIVPATLK+ + G G RP P R
Sbjct: 61 AWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGGGGDRPRGPPRGDGER 120
Query: 377 TAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFRGGFGRGR 499
DR YR P +G + KA P FRGG G R
Sbjct: 121 RFGDRDGYRGGPKSGGEYGDKAG-APADYQPGFRGGAGGAR 160
>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
Length = 177
Score = 142 bits (345), Expect = 9e-35
Identities = 77/163 (47%), Positives = 98/163 (60%), Gaps = 9/163 (5%)
Frame = +2
Query: 35 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 214
M++ + NR I +YLFKEGV AKKD++ PKHP ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 215 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR--------TETVRRGAVGRPDAP 370
AW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S + R+ R D
Sbjct: 60 AWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGD 119
Query: 371 ARTAEDRSAYRRAPPAG-APHDKKADVGPGSADVEFRGGFGRG 496
DR YR P G AD P R GFGRG
Sbjct: 120 RPRFGDRDGYRGGPRGGDEKGGAPADFQPSFQGGGGRPGFGRG 162
>At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C)
contains similarity to 40S ribosomal protein S10
Length = 179
Score = 140 bits (339), Expect = 5e-34
Identities = 76/165 (46%), Positives = 98/165 (59%), Gaps = 11/165 (6%)
Frame = +2
Query: 35 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 214
M++ + NR I +YLFKEGV AKKD++ KHP ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 215 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAV--GRPDAPARTA-- 382
AW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S + G R P
Sbjct: 60 AWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGD 119
Query: 383 ----EDRSAYRRAPPAGAPHDKKADVGPGSADVEFRG---GFGRG 496
DR YR P AG + P F+G GFGRG
Sbjct: 120 RPRFGDRDGYRAGPRAGGEFGGEKGGAPADYQPSFQGSGRGFGRG 164
>At3g49650.1 68416.m05426 kinesin motor protein-related several
kinesin-like proteins
Length = 813
Score = 29.1 bits (62), Expect = 1.8
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Frame = +2
Query: 317 SVRTETVRRGAVGRPDAPARTA-----EDRSAYRRAPPAGAPHDKKADVGPGSADVEFRG 481
S R TVR G+ P APA + + + +P +G K + G S +RG
Sbjct: 737 SPRAVTVRNGSYNTPLAPAAVSTKGARNQQRVFGTSPLSGTKGVKNSSYGQNSHTKLYRG 796
Query: 482 GFGRGRS 502
G +G S
Sbjct: 797 GGTKGHS 803
>At5g36210.1 68418.m04365 expressed protein
Length = 676
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 32 KMLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKH 130
K++ P Q+R IYE L K+G+ VA +Y +H
Sbjct: 603 KVVTPDQSR-KIYEALKKKGLPVALVEYEGEQH 634
>At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin
motor protein - Ustilago maydis, PID:g2062750; identical
to cDNA MKRP2 mRNA for kinesin-related protein
GI:16902293, kinesin-related protein [Arabidopsis
thaliana] GI:16902294
Length = 1055
Score = 27.9 bits (59), Expect = 4.2
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Frame = +3
Query: 258 NTLEF-SCTYLLKLYQQP*RGQCVQRQYVVV----QLAGLMLQHEQLKIDQLIGAHHQLE 422
NTL+F S +++Y R Q + + ++ +++ L L+ +QL+ L+G H+
Sbjct: 404 NTLKFASRAKSIEIYAS--RNQIIDEKSLIKKYQREISTLKLELDQLRRGMLVGVSHEEL 461
Query: 423 LLMIRRLMSALVQLMLNLEEVSE 491
+ + ++L V++ LEE E
Sbjct: 462 MSLKQQLEEGQVKMQSRLEEEEE 484
>At3g46940.1 68416.m05095 deoxyuridine 5'-triphosphate
nucleotidohydrolase family contains Pfam profile:
PF00692 deoxyuridine 5'-triphosphate nucleotidohydrolase
Length = 166
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +2
Query: 308 LKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFRGGF 487
L +V ++ RG P + + + R AP +G DVG G D ++RG
Sbjct: 53 LSSAVDSKVPARGKALIPTDLSIAVPEGTYARIAPRSGLAWKHSIDVGAGVIDADYRGPV 112
Query: 488 G 490
G
Sbjct: 113 G 113
>At3g21220.1 68416.m02682 mitogen-activated protein kinase kinase
(MAPKK), putative (MKK5) identical to GB:BAA28831 from
[Arabidopsis thaliana]; mitogen-activated protein kinase
kinase (MAPKK) family, PMID:12119167
Length = 348
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -2
Query: 495 PLPKPPLNSTSAEPGPTSAFLSXXXXXXXXXXXADLSSAVRAGASG 358
PLP PP +S+S+ P +SA +S + + + +GA G
Sbjct: 38 PLPLPPPSSSSSAPASSSA-ISTNISAAKSLSELERVNRIGSGAGG 82
>At1g16370.1 68414.m01958 transporter-related low similarity to
organic cation transporter OCTN1 from [Homo sapiens]
GI:2605501, [Mus musculus] GI:4126605, [Rattus
norvegicus] GI:5679326; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 521
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +2
Query: 131 PDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHL 283
P IP + SL ++ + +WR+ Y Y + + Y IFL+L
Sbjct: 210 PRATMIPFTLFVLGFMSLSGIAFLAQDSSWRYLYLYTSVPAVFYC-IFLYL 259
>At1g16010.1 68414.m01920 magnesium transporter CorA-like family
protein (MRS2-1) low similarity to SP|Q01926 RNA
splicing protein MRS2, mitochondrial precursor
{Saccharomyces cerevisiae}; contains Pfam profile
PF01544: CorA-like Mg2+ transporter protein
Length = 442
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 387 IDQLIGAHHQLELLMIRRLMSALVQLMLNLEEVSEEVD 500
+D+L L L +RRL S LV L +++V +E++
Sbjct: 209 LDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIE 246
>At4g08470.1 68417.m01398 mitogen-activated protein kinase, putative
similar to mitogen-activated protein kinase [Arabidopsis
thaliana] gi|1255448|dbj|BAA09057; contains Pfam
PF00069: Protein kinase domain
Length = 560
Score = 26.6 bits (56), Expect = 9.7
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = +2
Query: 14 VESWLSKMLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSR 193
+ SWL L+ + + S+YE + ++G A K+ L+K +Q + +Q L+
Sbjct: 300 ITSWLKGQLLGRGSYASVYEAISEDGDFFAVKEVSL-----LDK--GIQAQECIQQLEGE 352
Query: 194 GYVKEQFAWRHFYWYL-TNEGIEYLRIFLHL 283
+ Q ++ Y T + + L IFL L
Sbjct: 353 IALLSQLQHQNIVRYRGTAKDVSKLYIFLEL 383
>At3g09400.1 68416.m01116 protein phosphatase 2C family protein /
PP2C family protein similar to protein phosphatase-2c
(GI:3608412) [Mesembryanthemum crystallinum]; contains
Pfam PF00481 : Protein phosphatase 2C domain
Length = 650
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -2
Query: 489 PKPPLNSTSAEPGPTSAFLSXXXXXXXXXXXADLSSAVRAGASGLPTA 346
P+PPL PG T+ F S LS+++ SG+ +A
Sbjct: 55 PEPPLRPDPI-PGTTTTFRSISGASVSANTSTALSTSLSTDTSGIASA 101
>At2g21380.1 68415.m02544 kinesin motor protein-related
Length = 1058
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +3
Query: 348 QLAGLMLQHEQLKIDQLIGAHHQLELLMIRRLMSALVQLMLNLEEVSE 491
+++ L ++ +QL+ L+G H+ L + ++L V++ LEE E
Sbjct: 443 EISTLKVELDQLRRGVLVGVSHEELLSLKQQLQEGQVKMQSRLEEEEE 490
>At2g18870.1 68415.m02200 hypothetical protein contains 1
transmembrane domain; tandem duplication of fibronectin
type III domain protein (GI:3004551)
(TIGR_Ath1:At2g18880) [Arabidopsis thaliana]
Length = 239
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 107 KDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWY 238
K A K+P+ + Q +K ++ L+ GYV+ F + W+
Sbjct: 129 KPEKAKKNPESYGLGLEQCVKIIRKLECSGYVESTFRQKFLTWF 172
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,852,428
Number of Sequences: 28952
Number of extensions: 213598
Number of successful extensions: 702
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -