Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A05
         (285 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   2.8  
SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...    25   2.8  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    24   4.9  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    23   8.5  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    23   8.5  

>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 129  VLCSLF*TFNQNYWLQSSIKGYGRY 55
            V+C L    NQN+W+ + I    R+
Sbjct: 1157 VICFLISVINQNFWMSTLISQAWRF 1181


>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 272 GAESDPHFKKKASDDATIAKITRKLIIRLVCM 177
           G ++ P F KKA       K+T+K+++RL C+
Sbjct: 51  GGQTKPVFHKKA-------KVTKKVVLRLECV 75


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 135 ICVLCSLF*TFNQNYWLQSSIK 70
           IC L  +  TF+ +YW Q  ++
Sbjct: 5   ICTLTCILPTFSMDYWNQECVE 26


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 100 SKLLAPIEYKGLWALHRNIR 41
           SK +AP+ Y  +WA   N R
Sbjct: 752 SKTVAPLRYVKIWANTENAR 771


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 222 DRQDNQETHHSFSMHVHFTARNNNY 148
           ++ DN E+H   S H  F   N+N+
Sbjct: 504 EKFDNFESHIRSSRHRRFAENNDNF 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,185,200
Number of Sequences: 5004
Number of extensions: 19926
Number of successful extensions: 47
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)