Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A05
         (285 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0220 - 6531255-6532667                                           29   0.58 
07_01_1039 - 9037689-9038225,9038831-9040627                           26   5.4  
07_03_1095 + 23926977-23927657                                         25   7.1  
11_01_0268 - 2029007-2029464,2029521-2029615,2030815-2031077,203...    25   9.4  
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043...    25   9.4  
05_03_0514 - 14921653-14921760,14921992-14922054,14922162-149223...    25   9.4  

>03_02_0220 - 6531255-6532667
          Length = 470

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 10  VGARIFVPKINEYFCVTPITLYTRL 84
           VGAR  + K+ E+ CVT + +YT L
Sbjct: 204 VGARQLIEKMPEFGCVTNVAVYTAL 228


>07_01_1039 - 9037689-9038225,9038831-9040627
          Length = 777

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 239 ASDDATIAKITRKLIIRLVCMCISLP 162
           A DDA    +T+K++ RL C  +S P
Sbjct: 649 ADDDAMNRGVTKKILERLGCQVMSAP 674


>07_03_1095 + 23926977-23927657
          Length = 226

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 280 MTPELSPTPISKRRHQM 230
           + P LSPTP+  R HQ+
Sbjct: 8   LVPPLSPTPVDFRAHQV 24


>11_01_0268 -
           2029007-2029464,2029521-2029615,2030815-2031077,
           2031154-2031279,2031404-2032996
          Length = 844

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 254 HFKKKASDDATIAKITRKLIIRLVCMCISLPE 159
           H    A  D    +I+ + +  LVC C+SL E
Sbjct: 408 HVSSLAVIDLACCRISDENLFALVCQCVSLRE 439


>10_07_0063 -
           12502305-12503361,12503567-12503668,12504251-12504378,
           12504653-12504764,12504876-12504927,12505260-12505517,
           12505943-12506079,12506296-12506606
          Length = 718

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -2

Query: 284 CD-DAGAESDPHFKKKASDDATIAKITRKLIIRL 186
           CD DAG+  DP F   A  D  +  + R  + R+
Sbjct: 62  CDPDAGSYDDPTFDPAADGDLEVDAVLRSRMARM 95


>05_03_0514 -
           14921653-14921760,14921992-14922054,14922162-14922365,
           14923318-14923369,14924099-14924706
          Length = 344

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 274 PELSPTPISKRRHQMTRRSPR*P 206
           P   P+P+  RRH+  RRS   P
Sbjct: 16  PRALPSPLQPRRHRHRRRSAEPP 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,593,262
Number of Sequences: 37544
Number of extensions: 121900
Number of successful extensions: 231
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)