Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A05
         (285 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.4  
SB_56500| Best HMM Match : Tctex-1 (HMM E-Value=0.0079)                27   3.2  
SB_45876| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.2  
SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66)                26   5.6  
SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.4  
SB_44710| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.4  
SB_22495| Best HMM Match : DUF116 (HMM E-Value=8.1)                    25   9.8  
SB_27445| Best HMM Match : DUF227 (HMM E-Value=9.9)                    25   9.8  
SB_16799| Best HMM Match : Extensin_2 (HMM E-Value=0.063)              25   9.8  
SB_3151| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.8  

>SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1112

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -1

Query: 234 R*RDDRQDNQETHHSFSMHVHFTARNNNYYN*YICVLCSLF*TFNQNY 91
           R R +R+   +T  S     HF     +YYN YI    +   T+N N+
Sbjct: 50  RRRQERKKLNQTLDSLQTKTHFYEEQIDYYNQYIRDTLAGITTYNYNH 97



 Score = 25.0 bits (52), Expect = 9.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 234 R*RDDRQDNQETHHSFSMHVHFTARNNNYYN*YICV 127
           R R +R+   +T  S     HF     +YYN YI V
Sbjct: 235 RRRQERKKLNQTLDSLQTKTHFYEEQIDYYNQYIRV 270


>SB_56500| Best HMM Match : Tctex-1 (HMM E-Value=0.0079)
          Length = 502

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 271 ELSPTPISKRRHQMTRRSP 215
           E +PTP  KRR   +RRSP
Sbjct: 233 EKAPTPERKRRQSFSRRSP 251


>SB_45876| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -1

Query: 126 LCSLF*TFNQNYWLQSSIKGYGRYTEIFVNFGNED 22
           +C  F + ++NY + + I  Y + T++F+N+G  D
Sbjct: 1   MCGRFNSSSKNYEI-NVITEYQKGTQVFINYGPHD 34


>SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66)
          Length = 1709

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 2   HEEWVHASSFPKLTNISV 55
           H++W H SS  KL  IS+
Sbjct: 361 HDQWQHLSSLSKLLEISI 378


>SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2631

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 126  LCSLF*TFNQNYWLQSSIKGYGR 58
            LC +F  FN+ +W QS +  +GR
Sbjct: 1923 LCQVF-VFNKTFWGQSRLSVFGR 1944


>SB_44710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 835

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 1   ARGVGARIFVPKINEYFCVTPITLYTRL 84
           A+  G ++F+P  NEY  +T  T +  L
Sbjct: 241 AKAKGYKVFLPHRNEYVAITDCTTWELL 268


>SB_22495| Best HMM Match : DUF116 (HMM E-Value=8.1)
          Length = 440

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 233 DDATIAKITRKLIIRLVCMC 174
           D   I +ITRKL +  +C C
Sbjct: 93  DHRMIGRITRKLFVDFLCFC 112


>SB_27445| Best HMM Match : DUF227 (HMM E-Value=9.9)
          Length = 129

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 233 DDATIAKITRKLIIRLVCMC 174
           D   I +ITRKL +  +C C
Sbjct: 13  DHRMIGRITRKLFVDFLCFC 32


>SB_16799| Best HMM Match : Extensin_2 (HMM E-Value=0.063)
          Length = 597

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 277 TPELSPTPISKRRHQMTRRSPR*PGNS 197
           TP+ SPT ++ R      RSPR P  +
Sbjct: 100 TPKPSPTKVNDRSSPTYERSPRTPNEA 126


>SB_3151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 193 MMSFLVILAIVASSDAFFLKWGSDS 267
           M  FLV+  +VASS  + +++G DS
Sbjct: 1   MKVFLVLCVLVASSRGWSVRFGQDS 25


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,838,419
Number of Sequences: 59808
Number of extensions: 149729
Number of successful extensions: 270
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 303237528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)