Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A05
         (285 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53153-9|AAC69041.1|  511|Caenorhabditis elegans Hypothetical pr...    25   6.6  
Z68880-3|CAA93096.1|  138|Caenorhabditis elegans Hypothetical pr...    25   8.7  

>U53153-9|AAC69041.1|  511|Caenorhabditis elegans Hypothetical
           protein T19A5.5 protein.
          Length = 511

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -2

Query: 122 VHFFEPLIKTTGSNRV*RVMGVTQKYSLILGTKMR 18
           V++FE    +  S+R+ +++ + +KY  I+G K +
Sbjct: 450 VYYFEQDRMSRYSHRLLKILKINEKYKTIMGEKRK 484


>Z68880-3|CAA93096.1|  138|Caenorhabditis elegans Hypothetical
           protein T14G10.4 protein.
          Length = 138

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 19  RIFVPKINEYFCVTPITL 72
           ++FVP+ N+YF   PI L
Sbjct: 120 KVFVPQTNDYFTKHPIIL 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,616,245
Number of Sequences: 27780
Number of extensions: 114955
Number of successful extensions: 211
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)