Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A05
         (285 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53450.2 68418.m06643 protein kinase family protein contains ...    25   8.1  
At5g53450.1 68418.m06642 protein kinase family protein contains ...    25   8.1  
At2g44430.1 68415.m05525 DNA-binding bromodomain-containing prot...    25   8.1  
At1g47390.1 68414.m05246 F-box family protein contains F-box dom...    25   8.1  

>At5g53450.2 68418.m06643 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 590

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 198 HHSFSMHVHFTARNNNYYN*YICVLC-SLF*TFNQNYWLQSS 76
           +HS+SM VH    NN   + Y   L      +F+  +WLQ S
Sbjct: 74  YHSYSMQVHGYITNNLSDDQYSFTLVHGCHGSFSIRHWLQQS 115


>At5g53450.1 68418.m06642 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 670

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 198 HHSFSMHVHFTARNNNYYN*YICVLC-SLF*TFNQNYWLQSS 76
           +HS+SM VH    NN   + Y   L      +F+  +WLQ S
Sbjct: 154 YHSYSMQVHGYITNNLSDDQYSFTLVHGCHGSFSIRHWLQQS 195


>At2g44430.1 68415.m05525 DNA-binding bromodomain-containing protein
           contains Pfam domains, Pfam PF00439: Bromodomain and
           PF00249: Myb-like DNA-binding domain
          Length = 646

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 219 RQDNQETHHSFSMHVHFTARNNNY 148
           R++ +E   S++M+V  T  NNNY
Sbjct: 2   RKEEEEEAGSYNMNVDDTNNNNNY 25


>At1g47390.1 68414.m05246 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 370

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 93  YWLQSSIKGYGRYTEIFVNFGNE 25
           YW+ S +K    +  ++ NF NE
Sbjct: 200 YWVASHLKNNSLFVLVYYNFSNE 222


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,134,846
Number of Sequences: 28952
Number of extensions: 103155
Number of successful extensions: 236
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 251821800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)