Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A04
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.1  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    25   6.0  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    24   7.9  
SPCC4G3.17 |||HD domain|Schizosaccharomyces pombe|chr 3|||Manual       24   7.9  

>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 161 SIGSRDVGRTS*NSDVSIGAATALACALSDVAVFACTV 274
           +I  RDV        +++ AA  LA A SDVA+F   +
Sbjct: 516 TIVKRDVWNAQLGYAIALSAAVLLAVAKSDVALFTAVI 553


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +3

Query: 93  KQCRENINVSVTKSILLAALHNPASDLETL 182
           ++CR+NINV  ++ + +  + + + +LE L
Sbjct: 81  QKCRDNINVMASEVVNMLLVASSSKNLEVL 110


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 177 TLVERLETVTSRLEQL 224
           T+++RLE  TSRLE L
Sbjct: 16  TILKRLEAATSRLEDL 31


>SPCC4G3.17 |||HD domain|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 198

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 130 SRFYWQRCTIQHRISRRWSN-VLKQ*RLDWSS 222
           S+F W    IQH + + W N VL++    W+S
Sbjct: 161 SQFTWAGKLIQHPLVKGWLNDVLQEREQFWAS 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,503,855
Number of Sequences: 5004
Number of extensions: 25057
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)