BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_A04 (409 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 27 1.1 SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 25 6.0 SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 24 7.9 SPCC4G3.17 |||HD domain|Schizosaccharomyces pombe|chr 3|||Manual 24 7.9 >SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 644 Score = 27.1 bits (57), Expect = 1.1 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +2 Query: 161 SIGSRDVGRTS*NSDVSIGAATALACALSDVAVFACTV 274 +I RDV +++ AA LA A SDVA+F + Sbjct: 516 TIVKRDVWNAQLGYAIALSAAVLLAVAKSDVALFTAVI 553 >SPCC794.08 |||HEAT repeat protein, unknown biological role|Schizosaccharomyces pombe|chr 3|||Manual Length = 798 Score = 24.6 bits (51), Expect = 6.0 Identities = 9/30 (30%), Positives = 20/30 (66%) Frame = +3 Query: 93 KQCRENINVSVTKSILLAALHNPASDLETL 182 ++CR+NINV ++ + + + + + +LE L Sbjct: 81 QKCRDNINVMASEVVNMLLVASSSKNLEVL 110 >SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|Schizosaccharomyces pombe|chr 3|||Manual Length = 551 Score = 24.2 bits (50), Expect = 7.9 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = +3 Query: 177 TLVERLETVTSRLEQL 224 T+++RLE TSRLE L Sbjct: 16 TILKRLEAATSRLEDL 31 >SPCC4G3.17 |||HD domain|Schizosaccharomyces pombe|chr 3|||Manual Length = 198 Score = 24.2 bits (50), Expect = 7.9 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Frame = +1 Query: 130 SRFYWQRCTIQHRISRRWSN-VLKQ*RLDWSS 222 S+F W IQH + + W N VL++ W+S Sbjct: 161 SQFTWAGKLIQHPLVKGWLNDVLQEREQFWAS 192 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,503,855 Number of Sequences: 5004 Number of extensions: 25057 Number of successful extensions: 79 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 79 length of database: 2,362,478 effective HSP length: 66 effective length of database: 2,032,214 effective search space used: 140222766 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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