Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A04
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287...    33   0.066
11_06_0177 + 20936072-20937550                                         27   4.3  
11_01_0220 + 1717861-1717979,1718149-1718281,1718544-1718723,171...    27   5.7  
11_04_0090 - 13391028-13391117,13391369-13391502,13391532-133916...    27   7.6  
11_01_0779 + 6518556-6518601,6519825-6519967,6520091-6520114,652...    27   7.6  
06_03_0153 + 17300907-17301455                                         27   7.6  

>08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,
            2875909-2875947,2876309-2876354,2877380-2877922,
            2878827-2880847,2880972-2881215,2881642-2881684,
            2881923-2881962,2883580-2883675,2883712-2883759,
            2883964-2884290
          Length = 1498

 Score = 33.5 bits (73), Expect = 0.066
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 167  GSRDVGRTS*NS-DVSIGAATALACALSDVAVFACTVASFSPSNPISRTHRVY 322
            G  D GRTS  S D  I    ALA  + +  V     A   P+ P+ RT R Y
Sbjct: 1170 GFNDFGRTSLKSVDARIHCKDALAAEVQEAEVALANAAHGHPNRPVLRTDRAY 1222


>11_06_0177 + 20936072-20937550
          Length = 492

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 134 DFTGSVAQSSIGSRDVGRTS*NSDVSIGAATALACALSDVAVFACTVA 277
           DF G +A  +   RDV + + N  V + AA  +  A++  A  AC  A
Sbjct: 437 DFQG-LAVVTEDDRDVAQGACNFSVQVAAAALVGAAVAAAAAVACAAA 483


>11_01_0220 +
           1717861-1717979,1718149-1718281,1718544-1718723,
           1719046-1719126,1719259-1719422,1719518-1719654,
           1719900-1720015,1720134-1720367
          Length = 387

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +2

Query: 215 GAATALACALSDVAVFACTVASFSPSN 295
           G   ALA    +VAVFA    SFS SN
Sbjct: 172 GFEAALAAGAKEVAVFASASESFSKSN 198


>11_04_0090 -
           13391028-13391117,13391369-13391502,13391532-13391659,
           13391684-13391718,13391719-13392159
          Length = 275

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 221 ATALACALSDVAVFACTVASFSPSNPISR 307
           A A +  LS +A  A  ++S SPS P+SR
Sbjct: 2   AFAASPPLSSLAAAAAVISSSSPSKPLSR 30


>11_01_0779 +
           6518556-6518601,6519825-6519967,6520091-6520114,
           6520140-6520286,6521957-6522142,6522232-6522490,
           6522738-6522969,6523081-6523231,6523322-6523499,
           6523916-6524191,6524414-6524642,6524754-6524904,
           6525013-6525192
          Length = 733

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = -2

Query: 309 VLDMGLLGLKLATVQANTATSESAHARAVAAPIETSLFQDVRPTSRDPMLD 157
           +  +G+L L++ T   N +TS+   +R +   +     +  + TSR P L+
Sbjct: 365 IFSLGILILEIVTGLKNDSTSQEVSSRILIDNVRRKWLKSSQITSRYPSLE 415


>06_03_0153 + 17300907-17301455
          Length = 182

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
 Frame = +2

Query: 143 GSVAQSSIGSRDVGRTS*NSD------VSIGAATALACALSDVAVFACTVAS 280
           G  A+     R+VGR +  SD       S GAA+ALA A++  A  + + AS
Sbjct: 67  GDAARCGAAVREVGRLARESDRDRWCLASSGAASALAAAVASFAAVSDSSAS 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,717,269
Number of Sequences: 37544
Number of extensions: 159627
Number of successful extensions: 407
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)