BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_A04 (409 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_17044| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5 SB_7343| Best HMM Match : EGF (HMM E-Value=0) 27 4.5 SB_28229| Best HMM Match : PWP2 (HMM E-Value=0.68) 27 5.9 SB_17429| Best HMM Match : Fibrinogen_C (HMM E-Value=3.1e-34) 27 7.8 >SB_17044| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 386 Score = 27.5 bits (58), Expect = 4.5 Identities = 13/21 (61%), Positives = 16/21 (76%) Frame = +3 Query: 162 ASDLETLVERLETVTSRLEQL 224 A +L+ LV RLE VTSRLE + Sbjct: 2 AGNLDPLVVRLEAVTSRLEAM 22 >SB_7343| Best HMM Match : EGF (HMM E-Value=0) Length = 1233 Score = 27.5 bits (58), Expect = 4.5 Identities = 18/71 (25%), Positives = 28/71 (39%) Frame = -2 Query: 273 TVQANTATSESAHARAVAAPIETSLFQDVRPTSRDPMLDCATLPVKSTSLR*H*CFPGTA 94 T+ + T S + A + T++ T+ P PV+ + C PGT Sbjct: 587 TISSTTHVSSTPIASSSMVMTPTAINPSATVTTTVPSTSVVVKPVRDMTCSDSPCGPGTC 646 Query: 93 *NTKIYITLVN 61 + K Y LVN Sbjct: 647 IDVKDYHALVN 657 >SB_28229| Best HMM Match : PWP2 (HMM E-Value=0.68) Length = 317 Score = 27.1 bits (57), Expect = 5.9 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -2 Query: 282 KLATVQANTATSESAHARAVAAPIETSLFQDVRPTSRDPM 163 KL A+TA HARA+ A ++ + DV+ S D + Sbjct: 119 KLINTIASTAEFSYPHARALIAKVKAEIGDDVKTWSVDQL 158 >SB_17429| Best HMM Match : Fibrinogen_C (HMM E-Value=3.1e-34) Length = 499 Score = 26.6 bits (56), Expect = 7.8 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = +3 Query: 108 NINVSVTK-SILLAALHNPASDLETLVERLETVTSRLEQLPLLRAH 242 +IN V K S L+ A+ + ++T+ E+LE TSR +AH Sbjct: 147 SINSEVNKISDLILAIQSMKQQMDTMSEKLENCTSRPAFRESCKAH 192 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,326,143 Number of Sequences: 59808 Number of extensions: 186453 Number of successful extensions: 403 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 384 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 403 length of database: 16,821,457 effective HSP length: 75 effective length of database: 12,335,857 effective search space used: 740151420 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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