Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A04
         (409 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17044| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_7343| Best HMM Match : EGF (HMM E-Value=0)                          27   4.5  
SB_28229| Best HMM Match : PWP2 (HMM E-Value=0.68)                     27   5.9  
SB_17429| Best HMM Match : Fibrinogen_C (HMM E-Value=3.1e-34)          27   7.8  

>SB_17044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +3

Query: 162 ASDLETLVERLETVTSRLEQL 224
           A +L+ LV RLE VTSRLE +
Sbjct: 2   AGNLDPLVVRLEAVTSRLEAM 22


>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1233

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 18/71 (25%), Positives = 28/71 (39%)
 Frame = -2

Query: 273 TVQANTATSESAHARAVAAPIETSLFQDVRPTSRDPMLDCATLPVKSTSLR*H*CFPGTA 94
           T+ + T  S +  A +      T++      T+  P       PV+  +     C PGT 
Sbjct: 587 TISSTTHVSSTPIASSSMVMTPTAINPSATVTTTVPSTSVVVKPVRDMTCSDSPCGPGTC 646

Query: 93  *NTKIYITLVN 61
            + K Y  LVN
Sbjct: 647 IDVKDYHALVN 657


>SB_28229| Best HMM Match : PWP2 (HMM E-Value=0.68)
          Length = 317

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 282 KLATVQANTATSESAHARAVAAPIETSLFQDVRPTSRDPM 163
           KL    A+TA     HARA+ A ++  +  DV+  S D +
Sbjct: 119 KLINTIASTAEFSYPHARALIAKVKAEIGDDVKTWSVDQL 158


>SB_17429| Best HMM Match : Fibrinogen_C (HMM E-Value=3.1e-34)
          Length = 499

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 108 NINVSVTK-SILLAALHNPASDLETLVERLETVTSRLEQLPLLRAH 242
           +IN  V K S L+ A+ +    ++T+ E+LE  TSR       +AH
Sbjct: 147 SINSEVNKISDLILAIQSMKQQMDTMSEKLENCTSRPAFRESCKAH 192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,326,143
Number of Sequences: 59808
Number of extensions: 186453
Number of successful extensions: 403
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)