Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A04
         (409 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical pr...    30   0.74 
Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.      29   1.7  
Z71266-8|CAA95846.2|  729|Caenorhabditis elegans Hypothetical pr...    27   5.2  
AF038606-9|AAB92027.1|  152|Caenorhabditis elegans Hypothetical ...    27   5.2  
AL033514-27|CAA22088.1|  363|Caenorhabditis elegans Hypothetical...    27   6.9  

>Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical
           protein DY3.5 protein.
          Length = 796

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 297 PYQEPIEYITTDNMSINGYQDLMQGPLQTYLAQSK 401
           P Q P +Y+T      N YQ    G + TY  QSK
Sbjct: 522 PQQPPKQYVTQPPTYKNNYQTAALGQVNTYSGQSK 556


>Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical
           protein F22B5.7 protein.
          Length = 1415

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = -2

Query: 306 LDMGLLGLKLATVQANTATSESAHARAVAAPIETSLFQDVRPTSRDPMLDCATLPVKSTS 127
           +++  L     T  AN   ++         PI    F++ +PT RDP++ C    V +T+
Sbjct: 358 INVAALAANCITGIANGLRTKFQPFAVSVTPIIFEKFKEKKPTLRDPLVACIDAVVATTN 417

Query: 126 L 124
           L
Sbjct: 418 L 418


>AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.
          Length = 1415

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = -2

Query: 306 LDMGLLGLKLATVQANTATSESAHARAVAAPIETSLFQDVRPTSRDPMLDCATLPVKSTS 127
           +++  L     T  AN   ++         PI    F++ +PT RDP++ C    V +T+
Sbjct: 358 INVAALAANCITGIANGLRTKFQPFAVSVTPIIFEKFKEKKPTLRDPLVACIDAVVATTN 417

Query: 126 L 124
           L
Sbjct: 418 L 418


>Z71266-8|CAA95846.2|  729|Caenorhabditis elegans Hypothetical
           protein R06C7.9 protein.
          Length = 729

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = -3

Query: 209 RRHCFKTF---DQRL-EIRCWIVQRCQ*NRLRYANINVFPALLKTLKY 78
           R  CFK +   D+RL  I+   V +C   R  +AN+NV     KT +Y
Sbjct: 537 RHECFKPYKIRDKRLFNIQNISVLKCPDCRATFANLNVLSEHRKTCQY 584


>AF038606-9|AAB92027.1|  152|Caenorhabditis elegans Hypothetical
           protein C04C3.7 protein.
          Length = 152

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 81  IYITLVNMNHLLKISLFLGYLSYNPS 4
           IY+ L+N++  L + +FLG  S+ P+
Sbjct: 102 IYLPLLNLDFSLPMGIFLGIFSFYPA 127


>AL033514-27|CAA22088.1|  363|Caenorhabditis elegans Hypothetical
           protein Y75B8A.28 protein.
          Length = 363

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 300 YQEPIEYITTDNMSINGYQDLMQGPLQTYLAQSKQL 407
           YQ+P+  +   N   +G  D+ +GPL+ ++ + + L
Sbjct: 54  YQKPVYELQVYNPMNHGQLDIPEGPLEPWIGEEEVL 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,259,450
Number of Sequences: 27780
Number of extensions: 136475
Number of successful extensions: 326
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)