Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A04
         (409 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   0.44 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   3.1  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   4.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    20   9.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   9.4  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 0.44
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 312 WVLDMGLLGLKLATVQA 262
           WVLD G +G+   T+QA
Sbjct: 142 WVLDTGTIGIGNTTIQA 158


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 314 DGFLIWGCS 288
           DGF+IWG S
Sbjct: 328 DGFIIWGSS 336


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 312 WVLDMGLLGLK 280
           W+LD G+LG K
Sbjct: 135 WILDTGILGEK 145


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 297 GLLGLKLATVQANTA 253
           GLLGLKL   +  TA
Sbjct: 275 GLLGLKLINAENETA 289


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +2

Query: 242 LSDVAVFACTVASFSPSNPISRTHRVYY 325
           +SD++ +A  V S++ ++    TH  +Y
Sbjct: 191 ISDLSGYALVVYSWAKNDSWRITHNFFY 218


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 297  PYQEPIEYITTDNM 338
            P Q+P EY+  D+M
Sbjct: 973  PDQKPTEYLLEDSM 986


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,842
Number of Sequences: 438
Number of extensions: 1727
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)