Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A04
         (409 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10580.1 68414.m01192 transducin family protein / WD-40 repea...    28   2.1  
At2g34780.1 68415.m04270 expressed protein                             27   3.7  
At2g23480.1 68415.m02803 hypothetical protein contains Pfam prof...    26   8.5  

>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
           family protein similar to splicing factor hPRP17
           (gi|3283220); contains 7 WD-40 repeats (PF00400);similar
           to ESTs emb|F15435 and dbj|AUO62661
          Length = 573

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
 Frame = +2

Query: 248 DVAVFACTVASF--SPSNPISRT-HRVYYD*QHEH*WLPRPHAGSPANVSGAVQATR 409
           D    A TVA+   S S PI  T H V+Y+  H+  W P      P    G  Q  R
Sbjct: 36  DDTALALTVANVNQSKSKPIDPTQHVVFYNPTHDQLWAPMFGPAHPYAKDGIAQGMR 92


>At2g34780.1 68415.m04270 expressed protein
          Length = 1297

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 135 ILLAALHNPASDLETLVERLETVTSRLE 218
           +L  + H  +SDL TL   LETV  +LE
Sbjct: 211 VLRNSAHKTSSDLLTLTSNLETVKKQLE 238


>At2g23480.1 68415.m02803 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 705

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = -2

Query: 282 KLATVQANTATSESAHARAVA---APIETSLFQDVRPTSRDPMLDCAT 148
           K A VQA   T+ +A   A A       T+      PT+  PMLD +T
Sbjct: 68  KKAKVQATAKTTATAQTTATAMATTAAPTTTAPTTAPTTESPMLDDST 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,807,949
Number of Sequences: 28952
Number of extensions: 128617
Number of successful extensions: 314
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)