Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A03
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   2.6  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   3.4  
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c...    24   4.5  

>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 115 YNHGHYLKYLRVLCKQXXXXXIEKWQ 192
           Y+H  Y   L  LCK      +EKW+
Sbjct: 828 YHHEKYWPQLVELCKSRRLGILEKWR 853


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 140 TYVCCVNNNSY 172
           TY C +NNNSY
Sbjct: 465 TYACYINNNSY 475


>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +1

Query: 28  HEVYYTQGRKFIVQSNKQYSVLFVECS*FYNHGH 129
           H+VYY  GR        Q  V F   S  Y + H
Sbjct: 91  HDVYYGDGRSMSKTEEAQTIVTFTIGSYLYKYTH 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,315,523
Number of Sequences: 5004
Number of extensions: 22517
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)