Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A03
         (309 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8888| Best HMM Match : Fer4 (HMM E-Value=3.9)                       27   3.1  
SB_15344| Best HMM Match : Phage_30_3 (HMM E-Value=1.1)                27   4.1  
SB_53878| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  

>SB_8888| Best HMM Match : Fer4 (HMM E-Value=3.9)
          Length = 689

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 6   PRGCRNSARGVLHARTEVHSTVKQTIQCPFCR 101
           PR  R+    + H RT  H  VK+TI+  FC+
Sbjct: 255 PRDDRSRLFAMYHKRT--HKLVKETIETEFCK 284


>SB_15344| Best HMM Match : Phage_30_3 (HMM E-Value=1.1)
          Length = 367

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 28  HEVYYTQGRKFIVQSNKQYSVLFVECS*FYNHGHYL 135
           HE+Y  +  K  + +N    V+  +    Y HGHYL
Sbjct: 327 HEMYTEEVNKVALSANDDKRVILDDGIHTYAHGHYL 362


>SB_53878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 57  VHSTVKQTIQCPFCRVLLIL*SWS 128
           +H   +  + CPFC + +IL  WS
Sbjct: 116 LHLLTEGYLYCPFCGIRMILCDWS 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,109,273
Number of Sequences: 59808
Number of extensions: 175827
Number of successful extensions: 370
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)