BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_A03 (309 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_8888| Best HMM Match : Fer4 (HMM E-Value=3.9) 27 3.1 SB_15344| Best HMM Match : Phage_30_3 (HMM E-Value=1.1) 27 4.1 SB_53878| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4 >SB_8888| Best HMM Match : Fer4 (HMM E-Value=3.9) Length = 689 Score = 27.1 bits (57), Expect = 3.1 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +3 Query: 6 PRGCRNSARGVLHARTEVHSTVKQTIQCPFCR 101 PR R+ + H RT H VK+TI+ FC+ Sbjct: 255 PRDDRSRLFAMYHKRT--HKLVKETIETEFCK 284 >SB_15344| Best HMM Match : Phage_30_3 (HMM E-Value=1.1) Length = 367 Score = 26.6 bits (56), Expect = 4.1 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = +1 Query: 28 HEVYYTQGRKFIVQSNKQYSVLFVECS*FYNHGHYL 135 HE+Y + K + +N V+ + Y HGHYL Sbjct: 327 HEMYTEEVNKVALSANDDKRVILDDGIHTYAHGHYL 362 >SB_53878| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 166 Score = 26.2 bits (55), Expect = 5.4 Identities = 9/24 (37%), Positives = 14/24 (58%) Frame = +3 Query: 57 VHSTVKQTIQCPFCRVLLIL*SWS 128 +H + + CPFC + +IL WS Sbjct: 116 LHLLTEGYLYCPFCGIRMILCDWS 139 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,109,273 Number of Sequences: 59808 Number of extensions: 175827 Number of successful extensions: 370 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 353 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 370 length of database: 16,821,457 effective HSP length: 71 effective length of database: 12,575,089 effective search space used: 389827759 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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