Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A03
         (309 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68220-9|CAL64002.1|  312|Caenorhabditis elegans Hypothetical pr...    26   4.7  
Z68220-8|CAA92487.1|  221|Caenorhabditis elegans Hypothetical pr...    26   4.7  
U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical pr...    25   8.1  

>Z68220-9|CAL64002.1|  312|Caenorhabditis elegans Hypothetical
           protein T20D3.5b protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 6   PRGCRNSARGVLHARTEVHSTVKQTIQCPFCRVLLIL 116
           PR   NS+  + HA+    S V + + CP  RV ++L
Sbjct: 114 PRSPPNSSFSICHAQAAFLSGVCEAMLCPLERVQVLL 150


>Z68220-8|CAA92487.1|  221|Caenorhabditis elegans Hypothetical
           protein T20D3.5a protein.
          Length = 221

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 6   PRGCRNSARGVLHARTEVHSTVKQTIQCPFCRVLLIL 116
           PR   NS+  + HA+    S V + + CP  RV ++L
Sbjct: 23  PRSPPNSSFSICHAQAAFLSGVCEAMLCPLERVQVLL 59


>U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical
           protein B0244.6 protein.
          Length = 982

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/43 (20%), Positives = 27/43 (62%)
 Frame = +2

Query: 32  RCITRKDGSS*YSQTNNTVSFLSSALNFIIMVII*STYVCCVN 160
           R +T++     +++T   + FLS +++F+++  + ++++C  N
Sbjct: 360 RKVTKRSNPENFTETK-AIYFLSDSMSFLVLCRVGASFLCWSN 401


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,329,774
Number of Sequences: 27780
Number of extensions: 127510
Number of successful extensions: 296
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)