Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A03
         (309 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33880.1 68415.m04159 expressed protein                             26   4.5  
At4g19370.1 68417.m02852 hypothetical protein                          25   7.8  

>At2g33880.1 68415.m04159 expressed protein 
          Length = 378

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 184 KWQHYLECMLLNMASGISSPFST 252
           +WQH +   LL  AS  SSPFS+
Sbjct: 20  QWQHDINSPLLPSASHRSSPFSS 42


>At4g19370.1 68417.m02852 hypothetical protein 
          Length = 217

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 44  RKDGSS*YSQTNNTVSFLSSALNFIIMVII*STYVCCVNNNSY 172
           R+DG      T  TV  L S  NF+++V+I ST +      +Y
Sbjct: 81  REDGYKITDLTLPTVLLLLSWSNFVVVVLILSTAISMSRAQAY 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,827,569
Number of Sequences: 28952
Number of extensions: 114957
Number of successful extensions: 244
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)