Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A01
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    29   0.33 
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    28   0.77 
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    27   1.0  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   1.8  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    26   3.1  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    25   5.4  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    25   5.4  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    25   7.2  
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual    24   9.5  

>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 29.1 bits (62), Expect = 0.33
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +3

Query: 330 GRLM--CLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
           GR M  CLL  +RGDV+P      + T K  + I +  W
Sbjct: 310 GRYMATCLL--YRGDVIPRDVQAAVTTIKAKRTIQFVDW 346


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 27.9 bits (59), Expect = 0.77
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 330 GRLM--CLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
           GR M  CLL  +RGDV+P      + + K+ + I +  W
Sbjct: 314 GRYMATCLL--YRGDVIPRDVQAAVTSIKSRRTIQFVDW 350


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -1

Query: 202 YICNGRI-CKLKPGVVPKGCNGMC 134
           Y+C+G + C +  GV  + CNG C
Sbjct: 802 YVCDGTVLCPIVNGVSYQNCNGAC 825


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 334 RPSDDKI-FDLERHRRFAFDNTKGRKQPTTHRPLQSM 227
           +P DD + FD ER +   FD+ + R+ P  H P + M
Sbjct: 172 KPEDDSVFFDDERPKHHEFDD-EDREFPAHHEPGEHM 207


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 340 INRPSDDKIFDLERHRRFAFD 278
           +NRPSDD    L+   R+ F+
Sbjct: 469 LNRPSDDNYLKLDNTERYTFE 489


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 304 ERHRRFAFDNTKGRKQPTTHRPLQSMESNLRKGE 203
           +R R F  ++T   +     RP +S +S  RKG+
Sbjct: 67  QRKRTFPLNDTHSSRARQHERPFRSRKSRRRKGK 100


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -1

Query: 454 SAYIFQERYTMRFIVFVVTISVL--VWFG 374
           + YIF +   + FI+ + T+ +L  +WFG
Sbjct: 326 NGYIFNKPIYIAFIILLFTLQLLIYIWFG 354


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 284 LRQHKGTKTADNSQTLAVNGVKPKKRRVHMQWKDLQ 177
           L   KGTKT++ +   + N  K +     +  +DLQ
Sbjct: 17  LNDKKGTKTSETNDRNSTNNTKERDELEDLSEEDLQ 52


>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 454 SAYIFQERYTMRFIVFVVTISVLVWFGTTSPLN 356
           S Y+ Q    MRF    + I+ + WF    PL+
Sbjct: 96  SRYVQQVNKAMRFFNIRLVITPVPWFQVRKPLD 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,083,043
Number of Sequences: 5004
Number of extensions: 43747
Number of successful extensions: 113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)