Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A01
(454 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 31 0.57
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 31 0.57
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 30 0.76
03_02_0712 - 10600147-10600196,10600257-10600378,10600993-106014... 28 3.1
06_03_1159 + 28084786-28085428,28085520-28086166 28 4.0
04_03_0036 - 9950353-9950379,9950753-9950791,9951021-9951194,995... 28 4.0
09_04_0377 + 17086775-17088310 27 5.3
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 27 5.3
07_03_1213 + 24921603-24921746,24921923-24922786 27 9.3
06_01_1038 + 8153612-8153983,8154084-8154419,8154681-8154729,815... 27 9.3
06_01_0768 + 5742938-5743196,5743291-5744729 27 9.3
02_03_0343 + 17961977-17962596,17962670-17963015,17965933-179662... 27 9.3
02_02_0512 + 11092907-11093204,11095454-11095580,11096016-110965... 27 9.3
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 30.7 bits (66), Expect = 0.57
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 330 GRLMCLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
G+ M +RGDVVP + + T KT + I + W
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDW 346
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 30.7 bits (66), Expect = 0.57
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 330 GRLMCLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
G+ M +RGDVVP + + T KT + I + W
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDW 346
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 30.3 bits (65), Expect = 0.76
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 330 GRLMCLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
G+ M +RGDVVP + + T KT + + + W
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDW 346
>03_02_0712 -
10600147-10600196,10600257-10600378,10600993-10601489,
10601663-10601851,10601936-10602099,10602193-10602446,
10602535-10602691,10602830-10602995,10603121-10603227,
10603305-10603478,10603594-10603689,10603781-10603862,
10603948-10604058,10604253-10604309,10604638-10604709,
10604799-10605041,10605195-10605341,10605381-10605616,
10605745-10605865
Length = 1014
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 217 LRKGEYICNGRICKLKPGVVPKGC 146
LR G+ +C G + ++ PG VPK C
Sbjct: 76 LRNGQILC-GALNRVHPGAVPKAC 98
>06_03_1159 + 28084786-28085428,28085520-28086166
Length = 429
Score = 27.9 bits (59), Expect = 4.0
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = +1
Query: 127 HAGTCRCSLWARRRASVCKSFHCICTRLFLGLTPLTARVCELSAVFVPLCCRRRNACVFQ 306
HA T CSL A +++C S C R+ T + + VF +R C+
Sbjct: 294 HATTLACSLGAGDSSTLCTSGSCSVCRIIRHGFSATREIKDGVGVFTTSTSKRALECIAG 353
Query: 307 D 309
D
Sbjct: 354 D 354
>04_03_0036 -
9950353-9950379,9950753-9950791,9951021-9951194,
9951287-9951415,9951782-9952012,9952655-9952732,
9953035-9953055,9953790-9953855,9953935-9954015,
9954148-9954920,9955461-9955654,9956723-9956817,
9958190-9958219,9958334-9958453,9959185-9959262,
9959428-9959505,9960459-9960488,9960614-9960739,
9961239-9961379,9963416-9963532,9963619-9963670,
9963759-9963890,9964668-9964720,9964816-9964911,
9965255-9965260,9965416-9965561,9966494-9966629,
9966885-9967038,9968017-9968154,9968268-9968614
Length = 1295
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +2
Query: 305 KIEYLVI*GAVNVPPLR---IQRRCRAEPHKHGYCDDENYETHRVP 433
KI Y+V +NV PL+ R A+P+ G NYE + P
Sbjct: 507 KISYIVRDALINVGPLKDFSYGLRANADPNAMGNAKQSNYELYGKP 552
>09_04_0377 + 17086775-17088310
Length = 511
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -3
Query: 302 KTQAFRLRQHKGTKTADNSQTLAVNGVKPKKRRVHMQWKDLQTEARR 162
+ A R+R+ +A++ + LA+ + K +R H DLQ +R
Sbjct: 447 RMNAIRIRKENQVYSAEDKRALAMFNYEEKSKREHKVMADLQRLVQR 493
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +3
Query: 330 GRLMCLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
G+ M +RGDVVP + + + KT + + + W
Sbjct: 391 GKYMACCLMYRGDVVPKDVNAAVHSIKTRRTVQFVDW 427
>07_03_1213 + 24921603-24921746,24921923-24922786
Length = 335
Score = 26.6 bits (56), Expect = 9.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 123 TACWHMPLQPLGTTPGFSLQILP 191
TACW +P++ LG+ +S + P
Sbjct: 28 TACWSLPIKMLGSLISYSPSVNP 50
>06_01_1038 +
8153612-8153983,8154084-8154419,8154681-8154729,
8155277-8155427,8156104-8156239,8157400-8157726
Length = 456
Score = 26.6 bits (56), Expect = 9.3
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = -1
Query: 373 TTSPLNPQRRHI----NRPSDDKIFDLERHRRFAFDNTKGRKQPTTHRPLQSME 224
T P+ + HI + SD I +ER A + KG ++PTT Q ME
Sbjct: 313 TAIPVEGRFEHIVLSCSTTSDHAIVWIERESEKALELMKGNEKPTTPPAQQKME 366
>06_01_0768 + 5742938-5743196,5743291-5744729
Length = 565
Score = 26.6 bits (56), Expect = 9.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 395 YCDDENYETHRVPFL 439
YCDDE + HR P+L
Sbjct: 281 YCDDERHFLHRAPWL 295
>02_03_0343 +
17961977-17962596,17962670-17963015,17965933-17966291,
17966384-17966636
Length = 525
Score = 26.6 bits (56), Expect = 9.3
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = -1
Query: 370 TSPLNPQRRHINRPSDDKIFDLERHRRFAFDNTKGRKQPTTHRPLQSMESNLRKGEYICN 191
T+ P RH+ R + +I R R+FA R+ T R L S R G
Sbjct: 119 TAAYGPYWRHVRRVAVAEILSAHRVRQFA--GAHAREARATARRLCRAASRQRHGAGAAA 176
Query: 190 GRI 182
GR+
Sbjct: 177 GRV 179
>02_02_0512 +
11092907-11093204,11095454-11095580,11096016-11096560,
11096679-11096890
Length = 393
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Frame = +2
Query: 329 GAVNVPPLRIQRRCRAEPHKH---GYCDD 406
G VN PP+ +PH H G CDD
Sbjct: 247 GVVNAPPIGCAPAVTEQPHSHSPVGGCDD 275
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,989,307
Number of Sequences: 37544
Number of extensions: 299397
Number of successful extensions: 727
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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