Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A01
(454 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_2003| Best HMM Match : Tubulin (HMM E-Value=0) 33 0.15
SB_51150| Best HMM Match : Tubulin_C (HMM E-Value=0) 31 0.34
SB_34400| Best HMM Match : Tubulin (HMM E-Value=0) 31 0.34
SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.34
SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.34
SB_19437| Best HMM Match : Tubulin (HMM E-Value=0) 31 0.34
SB_2674| Best HMM Match : Tubulin (HMM E-Value=0) 31 0.34
SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.59
SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0) 31 0.59
SB_23895| Best HMM Match : Tubulin_C (HMM E-Value=0) 31 0.59
SB_4580| Best HMM Match : Pirin (HMM E-Value=4.1e-06) 29 1.4
SB_49082| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_54935| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_55181| Best HMM Match : DVL (HMM E-Value=6.1) 28 3.1
SB_11485| Best HMM Match : Cytochrom_B561 (HMM E-Value=2.1) 28 3.1
SB_58603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_40697| Best HMM Match : ABC_tran (HMM E-Value=7.1e-07) 28 4.2
SB_7554| Best HMM Match : zf-CXXC (HMM E-Value=6.5e-08) 28 4.2
SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_38326| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_14098| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_18671| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_11827| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_44838| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_17082| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_516| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_42101| Best HMM Match : Tryp_alpha_amyl (HMM E-Value=3.6) 27 7.3
SB_36759| Best HMM Match : Tryp_alpha_amyl (HMM E-Value=3.6) 27 7.3
SB_31706| Best HMM Match : Tropomyosin (HMM E-Value=2.7) 27 7.3
SB_25292| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_32940| Best HMM Match : EGF (HMM E-Value=0) 27 7.3
SB_12370| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_1324| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 27 9.6
SB_50032| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_43766| Best HMM Match : RVT_1 (HMM E-Value=0.43) 27 9.6
SB_37565| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_35617| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_5512| Best HMM Match : Tubulin (HMM E-Value=0) 27 9.6
>SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1231
Score = 33.1 bits (72), Expect = 0.11
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 342 CLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
CLL +RGDVVP ++ I T KT K I + W
Sbjct: 687 CLL--YRGDVVPKDVNSAIATIKTKKTIQFVDW 717
>SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 32.7 bits (71), Expect = 0.15
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +3
Query: 342 CLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
CLL FRGDVVP + I T KT + I + W
Sbjct: 301 CLL--FRGDVVPKDVNAAIATIKTKRTIQFVDW 331
Score = 32.7 bits (71), Expect = 0.15
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +3
Query: 342 CLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
CLL FRGDVVP + I T KT + I + W
Sbjct: 732 CLL--FRGDVVPKDVNAAIATIKTKRTIQFVDW 762
>SB_2003| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 451
Score = 32.7 bits (71), Expect = 0.15
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 342 CLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
CLL +RGDVVP ++ I T KT + I + W
Sbjct: 316 CLL--YRGDVVPKDVNSSIATIKTKRTIQFVDW 346
>SB_51150| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 232
Score = 31.5 bits (68), Expect = 0.34
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 342 CLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
CLL +RGDVVP + I T KT + I + W
Sbjct: 114 CLL--YRGDVVPKDVNAAIATIKTKRTIQFVDW 144
>SB_34400| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 380
Score = 31.5 bits (68), Expect = 0.34
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 342 CLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
CLL +RGDVVP + I T KT + I + W
Sbjct: 315 CLL--YRGDVVPKDVNAAIATIKTKRTIQFVDW 345
>SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 31.5 bits (68), Expect = 0.34
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 342 CLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
CLL +RGDVVP + I T KT + I + W
Sbjct: 316 CLL--YRGDVVPKDVNAAIATIKTKRTIQFVDW 346
>SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 31.5 bits (68), Expect = 0.34
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 342 CLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
CLL +RGDVVP + I T KT + I + W
Sbjct: 281 CLL--YRGDVVPKDVNAAIATIKTKRTIQFVDW 311
>SB_19437| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 885
Score = 31.5 bits (68), Expect = 0.34
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 342 CLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
CLL +RGDVVP + I T KT + I + W
Sbjct: 749 CLL--YRGDVVPKDVNAAIATIKTKRTIQFVDW 779
Score = 30.7 bits (66), Expect = 0.59
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 342 CLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
C+L +RGDVVP + I T KT + I + W
Sbjct: 316 CML--YRGDVVPKDVNAAIATIKTKRTIQFVDW 346
>SB_2674| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 1036
Score = 31.5 bits (68), Expect = 0.34
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 342 CLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
CLL +RGDVVP + I T KT + I + W
Sbjct: 901 CLL--YRGDVVPKDVNAAIATIKTKRTIQFVDW 931
Score = 30.7 bits (66), Expect = 0.59
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 342 CLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
C+L +RGDVVP + I T KT + I + W
Sbjct: 380 CML--YRGDVVPKDVNAAIATIKTKRTIQFVDW 410
>SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 30.7 bits (66), Expect = 0.59
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 342 CLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
C+L +RGDVVP + I T KT + I + W
Sbjct: 253 CML--YRGDVVPKDVNAAIATIKTKRTIQFVDW 283
>SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 377
Score = 30.7 bits (66), Expect = 0.59
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 342 CLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
C+L +RGDVVP + I T KT + I + W
Sbjct: 241 CML--YRGDVVPKDVNAAIATIKTKRTIQFVDW 271
>SB_23895| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 250
Score = 30.7 bits (66), Expect = 0.59
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 342 CLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
C+L +RGDVVP + I T KT + I + W
Sbjct: 114 CML--YRGDVVPKDVNAAIATIKTKRTIQFVDW 144
>SB_4580| Best HMM Match : Pirin (HMM E-Value=4.1e-06)
Length = 336
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 91 GIDNINEAIY*LHAGTCRCSLWA-RRRASVCKSFHCICTRLFLGLTPLTARVCELSA 258
G+ ++ ++ L A C S A VC +CT L+ G+ L+A VC LSA
Sbjct: 86 GVCTLSASVCTLSASVCTLSAGVCTLSAGVCTLSASVCT-LYAGVCTLSAGVCTLSA 141
>SB_49082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -3
Query: 47 TYQMFLVPNSCSPGD 3
TY+MF NSCSPGD
Sbjct: 11 TYRMFFQSNSCSPGD 25
>SB_54935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 2 DPPGCRNSARGTFGR 46
DPPGCRNS G+ GR
Sbjct: 17 DPPGCRNSMIGSGGR 31
>SB_55181| Best HMM Match : DVL (HMM E-Value=6.1)
Length = 175
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2
Query: 66 FYFFK*NLPNVPRAEFLQPGGS 1
+Y FK L P+ EFLQPGGS
Sbjct: 40 YYVFKYEL-KAPKIEFLQPGGS 60
>SB_11485| Best HMM Match : Cytochrom_B561 (HMM E-Value=2.1)
Length = 590
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 136 TCRCSLWARRRASVCKSFHCICTRLFLGLTPLTARVC 246
TC +L A RA V +S+ +FLG+T R C
Sbjct: 318 TCSQALPAHYRAHVLRSYPLTTVHMFLGVTRSLPRTC 354
>SB_58603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 27.9 bits (59), Expect = 4.2
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -1
Query: 352 QRRHINRPSDDKIFDLERHRRFAFDNTKGRKQPTTHRPLQSMESNLRKGEY 200
+R H+ + +D L R R+ NTK + + T R S+ RKGEY
Sbjct: 297 KREHVTKANDSYNAALNRQRKRNRLNTKTKLRKKTLRESSSINEE-RKGEY 346
>SB_40697| Best HMM Match : ABC_tran (HMM E-Value=7.1e-07)
Length = 659
Score = 27.9 bits (59), Expect = 4.2
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = -1
Query: 322 DKIFDLERHRRFAFDNTKGRKQPTTHRPLQSMESNLRKGEYICNGR 185
D I +ER R F D+ K QP+T L+ S L I GR
Sbjct: 327 DSIVSMERIRAFLLDDAKEIAQPSTFTALRRSGSRLSGRGMIFFGR 372
>SB_7554| Best HMM Match : zf-CXXC (HMM E-Value=6.5e-08)
Length = 343
Score = 27.9 bits (59), Expect = 4.2
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Frame = -1
Query: 388 LVWFGTTSPLNPQRRHINRPSDDKIFDLERH--RRFAFDNTKGRKQPTTHRPLQSMESNL 215
+V FGT P+ RR+ PS + + + + ++ RPL+ + N+
Sbjct: 6 VVQFGTNGPIT-MRRYGTEPSGKPFRSASIYPCKYVSLKLNITCLRGSSSRPLELSQQNI 64
Query: 214 RKGEYICNGRICKLKPGVVPKGC 146
G C+LKPG P+ C
Sbjct: 65 HNGRLKV---ACQLKPGTEPQNC 84
>SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2
Query: 45 LPNVPRAEFLQPGGS 1
+P VP EFLQPGGS
Sbjct: 16 IPTVPIIEFLQPGGS 30
>SB_38326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +2
Query: 2 DPPGCRNSARGT 37
DPPGCRNS R T
Sbjct: 17 DPPGCRNSIRST 28
>SB_14098| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 87 VLCQFINFYFFK*NLPNVPRAEFLQPGGS 1
+L F++ + N+P+ EFL+PGGS
Sbjct: 16 ILQLFLSMHIMTMNIPSYMHIEFLKPGGS 44
>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 342 CLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
CLL +RGDVVP ++ I K + I + W
Sbjct: 447 CLL--YRGDVVPKDVNSAIAAIKMKRTIQFVDW 477
>SB_18671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 54
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 2 DPPGCRNSARGTFGRF 49
DPPGCRNS F F
Sbjct: 17 DPPGCRNSMSNPFAAF 32
>SB_11827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 187
Score = 27.5 bits (58), Expect = 5.5
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Frame = -1
Query: 448 YIFQERYTMRFIVFVVTISVLVWFG-----TTSPLNPQRRHINR--PSDDKIFDLERHRR 290
+IF R +VF++ +S ++ FG PL+P RR++ +D + +HR
Sbjct: 47 FIFPIRLCAALVVFIIFVSNVIIFGRDPSDVRIPLSPWRRYVYSVCRRNDGMSSTLKHRN 106
Query: 289 FAFDNTKG 266
+N G
Sbjct: 107 LPDENAVG 114
>SB_44838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -1
Query: 352 QRRHINRPSDDKIFDLERHRRFAFDNTKGRKQPTTHRPLQSMESNLRKGEY 200
+R H+ + +D L R R+ + NTK + T R S++ RKG+Y
Sbjct: 11 KREHVTKANDSYDATLNRQRKRSRLNTKTTLRKKTLRESSSIDEE-RKGKY 60
>SB_17082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 27.5 bits (58), Expect = 5.5
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -3
Query: 44 YQMFLVPNSCSPGD 3
+ +FL+ NSCSPGD
Sbjct: 17 FPLFLISNSCSPGD 30
>SB_516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 56 LNKTYQMFLVPNSCSPGD 3
+N TY + V NSCSPGD
Sbjct: 1 MNSTYFINSVSNSCSPGD 18
>SB_42101| Best HMM Match : Tryp_alpha_amyl (HMM E-Value=3.6)
Length = 307
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +1
Query: 175 VCKSFHCICTRLFLGLTPLTARVCELSAVFVPLCC 279
V FHCI T L+ G T L R E VPL C
Sbjct: 133 VISRFHCIATSLYRGSTVLPHRYIE-----VPLYC 162
Score = 26.6 bits (56), Expect = 9.6
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = +1
Query: 175 VCKSFHCICTRLFLGLTPLTARVCELSAVFVPLCCR 282
V FHCI L+ G T L R E VPL CR
Sbjct: 261 VISRFHCIAISLYRGSTVLPYRYIE-----VPLYCR 291
>SB_36759| Best HMM Match : Tryp_alpha_amyl (HMM E-Value=3.6)
Length = 357
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +1
Query: 175 VCKSFHCICTRLFLGLTPLTARVCELSAVFVPLCC 279
V FHCI T L+ G T L R E VPL C
Sbjct: 137 VISRFHCIATSLYRGSTVLPHRYIE-----VPLYC 166
Score = 26.6 bits (56), Expect = 9.6
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = +1
Query: 175 VCKSFHCICTRLFLGLTPLTARVCELSAVFVPLCCR 282
V FHCI L+ G T L R E VPL CR
Sbjct: 265 VISRFHCIAISLYRGSTVLPYRYIE-----VPLYCR 295
>SB_31706| Best HMM Match : Tropomyosin (HMM E-Value=2.7)
Length = 275
Score = 27.1 bits (57), Expect = 7.3
Identities = 18/83 (21%), Positives = 40/83 (48%)
Frame = -1
Query: 442 FQERYTMRFIVFVVTISVLVWFGTTSPLNPQRRHINRPSDDKIFDLERHRRFAFDNTKGR 263
+ ++ FIV+V+ +++ + + +H+ + + + +LER F ++ +
Sbjct: 193 YHKQRMKEFIVYVMKMNLHAALSRKHMVERRGQHLVQMIQNFVNELERT---TFRLSELK 249
Query: 262 KQPTTHRPLQSMESNLRKGEYIC 194
KQ RPL+ ++ LR E C
Sbjct: 250 KQKCETRPLRKLQKKLRFAEIDC 272
>SB_25292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 2 DPPGCRNS-ARGTFGRFYLKK*KFINWHN 85
DPPGCRNS G + L + ++W N
Sbjct: 17 DPPGCRNSIVLGVAPNWVLARWAHLSWSN 45
>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2541
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -2
Query: 357 ILRGGTLTAPQMTRYSILKD--TGVSPSTTQRDENSRQLTDP 238
I R G P++TRY + KD T + T +++N R L+ P
Sbjct: 141 ISRRGKKREPEVTRYVLRKDDQTVFNGQTLDKNQNCRILSSP 182
>SB_32940| Best HMM Match : EGF (HMM E-Value=0)
Length = 1025
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 447 IYSKNGTRCVS*FSSSQYPCLC 382
+Y N +CV+ FS S Y C C
Sbjct: 325 VYCSNHGQCVTNFSMSSYQCKC 346
>SB_12370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -1
Query: 352 QRRHINRPSDDKIFDLERHRRFAFDNTKGRKQPTTHRPLQSMESNLRKGEY 200
+R H+ + +D L R R+ + NTK + T R S+ RKG+Y
Sbjct: 11 KREHVTKANDSYDATLNRQRKCSRLNTKTTLRKKTLRESSSINEE-RKGKY 60
>SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 438 KNGTRCVS*FSSSQYPCLCGS 376
KNG CV S++Y C+C S
Sbjct: 465 KNGAMCVEHGDSTEYSCICKS 485
>SB_1324| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2
Query: 45 LPNVPRAEFLQPGGS 1
LP +P EFLQPGGS
Sbjct: 28 LPPLPDIEFLQPGGS 42
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -2
Query: 354 LRGGTLTAPQMTRYSILKDTGV 289
++GG+LTA Q R + L+DTG+
Sbjct: 3269 VKGGSLTACQRQRQAALQDTGL 3290
>SB_50032| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 26.6 bits (56), Expect = 9.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 50 KTYQMFLVPNSCSPGD 3
+ Y++ L+ NSCSPGD
Sbjct: 27 RRYRVSLISNSCSPGD 42
>SB_43766| Best HMM Match : RVT_1 (HMM E-Value=0.43)
Length = 491
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -1
Query: 298 HRRFAFDNTKGRKQPTTHRPLQSMESNLRKGEY 200
HR A KG T PL+ M NL KGE+
Sbjct: 330 HRALALAAEKGSSVWLTVLPLREMGYNLNKGEF 362
>SB_37565| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = -2
Query: 243 DPCSQWSQT*EKASTYAMEGFAN*SPASCPKAATACASMQLIYSFINIIY 94
+PC + + + Y A S +C K T+CAS++ + I+ +Y
Sbjct: 137 NPCKNKGKCIDHVNNYTCRCQAGVSGRNCEKVPTSCASIRALGFTISGVY 186
>SB_35617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 26.6 bits (56), Expect = 9.6
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -1
Query: 352 QRRHINRPSDDKIFDLERHRRFAFDNTKGRKQPTTHRPLQSMESNLRKGEY 200
+R H+ + +D L R R+ + NTK + T R S+ RKG+Y
Sbjct: 11 KREHVTKANDSYDATLNRQRKRSRLNTKTTLRKKTLRESSSINEE-RKGKY 60
>SB_5512| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 365
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 342 CLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
CLL +RGDVVP + I T + + + W
Sbjct: 241 CLL--YRGDVVPKDVNAAIATIRPKRTFQFGDW 271
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,475,418
Number of Sequences: 59808
Number of extensions: 375525
Number of successful extensions: 2564
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 2391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2564
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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