Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A01
         (454 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U65429-1|AAB48241.1|  450|Caenorhabditis elegans alpha-tubulin M...    33   0.097
D21134-1|BAA22203.1|  449|Caenorhabditis elegans alpha-3 tubulin...    33   0.097
AF003387-1|AAB54263.2|  450|Caenorhabditis elegans Mechanosensor...    33   0.097
AB017190-1|BAA32600.1|  450|Caenorhabditis elegans Alpha tubulin...    33   0.097
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    33   0.13 
Z99709-10|CAB16856.1|  448|Caenorhabditis elegans Hypothetical p...    32   0.22 
Z81070-8|CAB03001.1|  449|Caenorhabditis elegans Hypothetical pr...    32   0.22 
D16439-1|BAA03909.1|  449|Caenorhabditis elegans alpha-1 tubulin...    32   0.22 
D14965-1|BAA03610.1|  448|Caenorhabditis elegans alpha-2 tubulin...    32   0.22 
Z37092-12|CAA85463.1|  448|Caenorhabditis elegans Hypothetical p...    31   0.30 
AL023832-2|CAA19476.1|  448|Caenorhabditis elegans Hypothetical ...    31   0.30 
Z78062-1|CAB01495.1|  447|Caenorhabditis elegans Hypothetical pr...    31   0.39 
Z81134-1|CAB03447.1|  444|Caenorhabditis elegans Hypothetical pr...    31   0.52 
U40420-4|AAA81432.2|  456|Caenorhabditis elegans Tubulin, alpha ...    30   0.69 
Z81523-9|CAB04246.2|  464|Caenorhabditis elegans Hypothetical pr...    30   0.91 
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    30   0.91 
AB017191-1|BAA32601.1|  435|Caenorhabditis elegans alpha tubulin...    30   0.91 
Z37140-7|CAA85497.2|  452|Caenorhabditis elegans Hypothetical pr...    29   1.2  
U88169-8|AAB42237.1|  866|Caenorhabditis elegans Holocentric chr...    27   4.8  
AF321299-1|AAK07638.1|  866|Caenorhabditis elegans CENP-C-like p...    27   4.8  
Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>U65429-1|AAB48241.1|  450|Caenorhabditis elegans alpha-tubulin
           MEC-12 protein.
          Length = 450

 Score = 33.1 bits (72), Expect = 0.097
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +3

Query: 339 MCLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
           +CLL  FRGDVVP   +  I T KT + I +  W
Sbjct: 315 VCLL--FRGDVVPKDVNAAIATIKTKRSIQFVDW 346


>D21134-1|BAA22203.1|  449|Caenorhabditis elegans alpha-3 tubulin
           protein.
          Length = 449

 Score = 33.1 bits (72), Expect = 0.097
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +3

Query: 339 MCLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
           +CLL  FRGDVVP   +  I T KT + I +  W
Sbjct: 314 VCLL--FRGDVVPKDVNAAIATIKTKRSIQFVDW 345


>AF003387-1|AAB54263.2|  450|Caenorhabditis elegans Mechanosensory
           abnormality protein12 protein.
          Length = 450

 Score = 33.1 bits (72), Expect = 0.097
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +3

Query: 339 MCLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
           +CLL  FRGDVVP   +  I T KT + I +  W
Sbjct: 315 VCLL--FRGDVVPKDVNAAIATIKTKRSIQFVDW 346


>AB017190-1|BAA32600.1|  450|Caenorhabditis elegans Alpha tubulin
           (tba-3) protein.
          Length = 450

 Score = 33.1 bits (72), Expect = 0.097
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +3

Query: 339 MCLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
           +CLL  FRGDVVP   +  I T KT + I +  W
Sbjct: 315 VCLL--FRGDVVPKDVNAAIATIKTKRSIQFVDW 346


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 20/72 (27%), Positives = 31/72 (43%)
 Frame = +1

Query: 163 RRASVCKSFHCICTRLFLGLTPLTARVCELSAVFVPLCCRRRNACVFQDRISCHLRGG*C 342
           R    C+S  C+C+       PL+AR+C  + V  P  C  + A   +      +    C
Sbjct: 601 RYGEECRSGVCVCSYNCPANPPLSARICGENGVLYPSLCHLQLASCQKGAPISEMPPSHC 660

Query: 343 ASSEDSEEMSCR 378
            SS+ S   SC+
Sbjct: 661 HSSKTSFPDSCQ 672


>Z99709-10|CAB16856.1|  448|Caenorhabditis elegans Hypothetical
           protein C47B2.3 protein.
          Length = 448

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 339 MCLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
           +CLL  +RGDVVP   +T I   KT + I +  W
Sbjct: 313 VCLL--YRGDVVPKDVNTAIAAIKTKRTIQFVDW 344


>Z81070-8|CAB03001.1|  449|Caenorhabditis elegans Hypothetical
           protein F26E4.8 protein.
          Length = 449

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 339 MCLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
           +CLL  +RGDVVP   +T I   KT + I +  W
Sbjct: 313 VCLL--YRGDVVPKDVNTAIAAIKTKRTIQFVDW 344


>D16439-1|BAA03909.1|  449|Caenorhabditis elegans alpha-1 tubulin
           protein.
          Length = 449

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 339 MCLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
           +CLL  +RGDVVP   +T I   KT + I +  W
Sbjct: 313 VCLL--YRGDVVPKDVNTAIAAIKTKRTIQFVDW 344


>D14965-1|BAA03610.1|  448|Caenorhabditis elegans alpha-2 tubulin
           protein.
          Length = 448

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 339 MCLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
           +CLL  +RGDVVP   +T I   KT + I +  W
Sbjct: 313 VCLL--YRGDVVPKDVNTAIAAIKTKRTIQFVDW 344


>Z37092-12|CAA85463.1|  448|Caenorhabditis elegans Hypothetical
           protein F44F4.11 protein.
          Length = 448

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 339 MCLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
           +CLL  +RGDVVP   +T I   KT + + +  W
Sbjct: 313 VCLL--YRGDVVPKDVNTAITAIKTKRSVQFVDW 344


>AL023832-2|CAA19476.1|  448|Caenorhabditis elegans Hypothetical
           protein F44F4.11 protein.
          Length = 448

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 339 MCLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
           +CLL  +RGDVVP   +T I   KT + + +  W
Sbjct: 313 VCLL--YRGDVVPKDVNTAITAIKTKRSVQFVDW 344


>Z78062-1|CAB01495.1|  447|Caenorhabditis elegans Hypothetical
           protein F16D3.1 protein.
          Length = 447

 Score = 31.1 bits (67), Expect = 0.39
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 342 CLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
           CLL  +RGDVVP   ++ I T KT + I +  W
Sbjct: 316 CLL--YRGDVVPKEINSAISTIKTKRAIQFVDW 346


>Z81134-1|CAB03447.1|  444|Caenorhabditis elegans Hypothetical
           protein T28D6.2 protein.
          Length = 444

 Score = 30.7 bits (66), Expect = 0.52
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 339 MCLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
           +CLL  +RGDVVP   S  I + KT + + +  W
Sbjct: 310 VCLL--YRGDVVPKDVSAAIKSIKTQRSVQFVDW 341


>U40420-4|AAA81432.2|  456|Caenorhabditis elegans Tubulin, alpha
           protein 9 protein.
          Length = 456

 Score = 30.3 bits (65), Expect = 0.69
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 342 CLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
           CLL  +RGDVVP   +  I + KT + I +  W
Sbjct: 321 CLL--YRGDVVPKDVNAAIASVKTKRSIQFVDW 351


>Z81523-9|CAB04246.2|  464|Caenorhabditis elegans Hypothetical
           protein F32H2.9 protein.
          Length = 464

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 339 MCLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
           +CLL  +RGDVVP   ++ I   KT + + +  W
Sbjct: 321 VCLL--YRGDVVPKDINSAIAAVKTKRTVQFVEW 352


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +1

Query: 163 RRASVCKSFHCICTRLFLGLTPLTARVCELSAVFVPLCCRRRNACVFQDRISCHLRGG*C 342
           R    C+S  C+C+       PL+AR+C  + V  P  C  + A   +      +    C
Sbjct: 593 RYGEECRSGVCVCSYNCPANPPLSARICGENGVLYPSLCHLQLASCQKGAPISEMPPSHC 652

Query: 343 ASSEDS 360
            SS+ S
Sbjct: 653 HSSKTS 658


>AB017191-1|BAA32601.1|  435|Caenorhabditis elegans alpha tubulin
           (tba-6) protein.
          Length = 435

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 339 MCLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
           +CLL  +RGDVVP   ++ I   KT + + +  W
Sbjct: 293 VCLL--YRGDVVPKDINSAIAAVKTKRTVQFVEW 324


>Z37140-7|CAA85497.2|  452|Caenorhabditis elegans Hypothetical
           protein ZK899.4 protein.
          Length = 452

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = +3

Query: 267 PFVLSKAKRLCLSRSNIL----SSEGRLMCLL*GFRGDVVPNHTSTDIVTTKTMKRIVYR 434
           P  +     +C  ++N +     S G+ M +   +RGDVVP   +  I + K  + I + 
Sbjct: 288 PLSVQDITHMCFEKANQMVKCDPSAGKYMAVCLLYRGDVVPKDVNAAISSVKAKRGINFV 347

Query: 435 SW 440
            W
Sbjct: 348 DW 349


>U88169-8|AAB42237.1|  866|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 4 protein.
          Length = 866

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 277 NTKGRKQPTTHRPLQSMESNLRKGE 203
           N+KG ++P THR ++  E  L K E
Sbjct: 739 NSKGNRRPRTHRGMKLKEHQLMKPE 763


>AF321299-1|AAK07638.1|  866|Caenorhabditis elegans CENP-C-like
           protein HCP-4 protein.
          Length = 866

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 277 NTKGRKQPTTHRPLQSMESNLRKGE 203
           N+KG ++P THR ++  E  L K E
Sbjct: 739 NSKGNRRPRTHRGMKLKEHQLMKPE 763


>Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical
           protein B0464.2 protein.
          Length = 1150

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 98  IILMKLYINCMLAHAVAAFGHDAGLQFANP 187
           IIL+  Y +  L HAV+ FG    LQ  +P
Sbjct: 254 IILLNTYDHDSLKHAVSLFGRSYNLQTDHP 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,925,368
Number of Sequences: 27780
Number of extensions: 266475
Number of successful extensions: 803
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)