Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_A01
         (454 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   3.6  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   3.6  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   6.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.3  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   8.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   8.3  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -1

Query: 196 CNGRICKLKPGVVPKG-CNGMC 134
           C+GR  +  P VVPK  C  +C
Sbjct: 46  CDGRCQRFCPNVVPKPLCIKIC 67


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -1

Query: 196 CNGRICKLKPGVVPKG-CNGMC 134
           C+GR  +  P VVPK  C  +C
Sbjct: 46  CDGRCQRFCPNVVPKPLCIKIC 67


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 142 RCSLWARRRASVCKSFHCICTR 207
           RC L  RR+   C++  CIC +
Sbjct: 84  RC-LAQRRKGGSCRNGVCICRK 104


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -1

Query: 391 VLVWFGTTSPLNPQRRHINRPSDD 320
           + +WF T+  ++ + R + R  DD
Sbjct: 548 IYIWFTTSGTISEKFRKLIRIEDD 571


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 366 DVVPNHTSTDIVTTKTM 416
           DVV N ++ ++V TKT+
Sbjct: 80  DVVYNASNNELVRTKTL 96


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +3

Query: 366 DVVPNHTS 389
           D+VPNHTS
Sbjct: 117 DLVPNHTS 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,403
Number of Sequences: 438
Number of extensions: 2861
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)