Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_A01
(454 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g12170.1 68418.m01428 expressed protein similar to unknown pr... 29 1.1
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 29 1.1
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 29 1.1
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 29 1.1
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 29 1.1
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 29 1.5
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 29 1.5
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 29 1.9
At5g53120.3 68418.m06603 spermidine synthase, putative / putresc... 28 3.4
At5g53120.2 68418.m06602 spermidine synthase, putative / putresc... 28 3.4
At5g53120.1 68418.m06601 spermidine synthase, putative / putresc... 28 3.4
At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR... 28 3.4
At5g46510.1 68418.m05727 disease resistance protein (TIR-NBS-LRR... 28 3.4
At5g06180.2 68418.m00690 expressed protein similar to unknown pr... 27 4.5
At5g06180.1 68418.m00689 expressed protein similar to unknown pr... 27 4.5
At1g03380.1 68414.m00317 expressed protein 27 4.5
At2g34150.1 68415.m04180 expressed protein 27 7.8
At1g77800.1 68414.m09059 PHD finger family protein contains Pfam... 27 7.8
>At5g12170.1 68418.m01428 expressed protein similar to unknown
protein (pir||T09909)
Length = 276
Score = 29.5 bits (63), Expect = 1.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 208 GEYICNGRICKLKPGVVPKGCNG 140
G Y+ +G +C L G + KGC+G
Sbjct: 155 GTYLKDGAVCFLNNGTITKGCDG 177
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 330 GRLMCLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
G+ M +RGDVVP + + T KT + I + W
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDW 346
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 330 GRLMCLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
G+ M +RGDVVP + + T KT + I + W
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDW 346
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 330 GRLMCLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
G+ M +RGDVVP + + T KT + I + W
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDW 346
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 330 GRLMCLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
G+ M +RGDVVP + + T KT + I + W
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDW 346
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 330 GRLMCLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
G+ M +RGDVVP + + T KT + + + W
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDW 346
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 330 GRLMCLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
G+ M +RGDVVP + + T KT + + + W
Sbjct: 310 GKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDW 346
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 330 GRLMCLL*GFRGDVVPNHTSTDIVTTKTMKRIVYRSW 440
G+ M +RGDVVP +T + K + I + W
Sbjct: 310 GKYMACCLMYRGDVVPKDVNTAVAAIKAKRTIQFVDW 346
>At5g53120.3 68418.m06603 spermidine synthase, putative / putrescine
aminopropyltransferase, putative similar to SP|O82147
Spermidine synthase (EC 2.5.1.16) (Putrescine
aminopropyltransferase) (SPDSY) {Coffea arabica};
contains Pfam profile PF01564: Spermine/spermidine
synthase
Length = 359
Score = 27.9 bits (59), Expect = 3.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 265 VPLCCRRRNACVFQDRISCH 324
VP CC + ACV +D CH
Sbjct: 29 VPSCCLKAMACVPEDDAKCH 48
>At5g53120.2 68418.m06602 spermidine synthase, putative / putrescine
aminopropyltransferase, putative similar to SP|O82147
Spermidine synthase (EC 2.5.1.16) (Putrescine
aminopropyltransferase) (SPDSY) {Coffea arabica};
contains Pfam profile PF01564: Spermine/spermidine
synthase
Length = 359
Score = 27.9 bits (59), Expect = 3.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 265 VPLCCRRRNACVFQDRISCH 324
VP CC + ACV +D CH
Sbjct: 29 VPSCCLKAMACVPEDDAKCH 48
>At5g53120.1 68418.m06601 spermidine synthase, putative / putrescine
aminopropyltransferase, putative similar to SP|O82147
Spermidine synthase (EC 2.5.1.16) (Putrescine
aminopropyltransferase) (SPDSY) {Coffea arabica};
contains Pfam profile PF01564: Spermine/spermidine
synthase
Length = 359
Score = 27.9 bits (59), Expect = 3.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 265 VPLCCRRRNACVFQDRISCH 324
VP CC + ACV +D CH
Sbjct: 29 VPSCCLKAMACVPEDDAKCH 48
>At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1298
Score = 27.9 bits (59), Expect = 3.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 147 QPLGTTPGFSLQILPLHMYSPFLRF 221
QP GT+ + +LP + PF RF
Sbjct: 1020 QPFGTSSSLPIPLLPTQLSQPFFRF 1044
>At5g46510.1 68418.m05727 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1353
Score = 27.9 bits (59), Expect = 3.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 147 QPLGTTPGFSLQILPLHMYSPFLRF 221
QP GT+ + +LP + PF RF
Sbjct: 981 QPFGTSSSLPIPLLPTQLSQPFFRF 1005
>At5g06180.2 68418.m00690 expressed protein similar to unknown
protein (sp|Q9ZE28)
Length = 404
Score = 27.5 bits (58), Expect = 4.5
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Frame = +3
Query: 168 GFSLQILPLHMYSPFLRFDSIDCKGL*V--VGCFRPFVLSKAKRLCLSRSNILSSEGRLM 341
G LQ LP+ +Y RF S C GL + G F + AK++ G L+
Sbjct: 66 GGILQWLPISLYKRIHRFISTICAGLSINATGITNVFEVDDAKQIAAMARKTFEKNGPLL 125
Query: 342 CLL*G 356
+ G
Sbjct: 126 VVASG 130
>At5g06180.1 68418.m00689 expressed protein similar to unknown
protein (sp|Q9ZE28)
Length = 404
Score = 27.5 bits (58), Expect = 4.5
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Frame = +3
Query: 168 GFSLQILPLHMYSPFLRFDSIDCKGL*V--VGCFRPFVLSKAKRLCLSRSNILSSEGRLM 341
G LQ LP+ +Y RF S C GL + G F + AK++ G L+
Sbjct: 66 GGILQWLPISLYKRIHRFISTICAGLSINATGITNVFEVDDAKQIAAMARKTFEKNGPLL 125
Query: 342 CLL*G 356
+ G
Sbjct: 126 VVASG 130
>At1g03380.1 68414.m00317 expressed protein
Length = 926
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 289 NACVFQDRISCHLRGG*CASSEDSEEMSCR 378
N + QD I+CH + G S+E SEE S +
Sbjct: 754 NGKICQDIINCHSKPGSIESAESSEEGSTK 783
>At2g34150.1 68415.m04180 expressed protein
Length = 700
Score = 26.6 bits (56), Expect = 7.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 310 DLERHRRFAFDNTKGRKQP 254
DL+ HR F+FD+ G ++P
Sbjct: 110 DLQEHRSFSFDSRSGGEKP 128
>At1g77800.1 68414.m09059 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1423
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 199 ICNGRICKLKPGVVPKGCNGMCQ 131
+CN +CK+K G + CNG C+
Sbjct: 400 LCN--LCKVKSGACIRCCNGTCR 420
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,039,959
Number of Sequences: 28952
Number of extensions: 237125
Number of successful extensions: 655
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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