Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1055
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    32   0.034
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    28   0.55 
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    28   0.72 
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    27   0.96 
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    27   1.3  
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    26   2.2  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    26   2.9  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    26   2.9  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   3.9  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   3.9  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    25   5.1  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    25   5.1  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    25   6.7  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    24   8.9  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    24   8.9  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    24   8.9  

>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 32.3 bits (70), Expect = 0.034
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -2

Query: 274 RLRSTAMCLQYHSLQIVHNNNIKNHALAYYARIIIH 167
           + +S    +++ +  I+HNNN+KNH L   A +++H
Sbjct: 412 KFQSWGHVVKHITQSIMHNNNLKNHELVSSAELLMH 447


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 28.3 bits (60), Expect = 0.55
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -2

Query: 319 WLHIALTIKRIYKCLRLRSTAMCLQYHSLQIVHNNNIKNHA--LAYY 185
           WL   LT ++   CL +   +  L +    I+H   +KN A  L YY
Sbjct: 600 WLEAYLTSQKNITCLIVSHDSSFLDHVCTDIIHYEGVKNQAKKLGYY 646


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 27.9 bits (59), Expect = 0.72
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
 Frame = -1

Query: 278 PTSKVHCHVSPVSLTTNSSQQQYKKPRACLLCENYHPLYTCQSFIDFNLQKKL-KFVQDN 102
           P+SK+  H+   S T + +   Y KP+         P++  + F   N  K   +F   N
Sbjct: 473 PSSKITKHLKDASSTYSINPPSYNKPKV-ERNTTADPIFVGKRFYSTNRHKAFSRFADFN 531

Query: 101 NLCPNCLRPGHSVSNCRFGSCRKCNKRPS 15
           +    C+    S  NC  G+ RK +++ S
Sbjct: 532 SHRFPCIFTSFSCYNCISGT-RKYSRQYS 559


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 27.5 bits (58), Expect = 0.96
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 205 FLYCCCELFVVSDTGDTWQWTLDVGTCIYALLL 303
           F Y  C L++ S     + W+    T IY LLL
Sbjct: 288 FTYSHCTLYLFSHDPSVYNWSTQYTTGIYVLLL 320


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = -1

Query: 278 PTSKVHCHVSPVSLTTNSSQQQYKKPRACLLCENYHPLYTCQSFIDFNLQKKL-KFVQDN 102
           P+SK+  H+   S T + +   Y KP+         P++  + F   N  K   +F   N
Sbjct: 473 PSSKITKHLKDASSTYSINPPSYNKPKV-ERNTTADPIFVGKRFYSTNRHKAFSRFADFN 531

Query: 101 NLCPNCLRPGHSVSNCRFGS 42
           +    C+    S  NC  G+
Sbjct: 532 SHRFPCIFTSFSCYNCISGT 551


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 179

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
 Frame = -1

Query: 95 CPNCLRPGHSVSNCRFGS-CRKCNK 24
          C NC   GH    C  GS C  CN+
Sbjct: 19 CYNCGENGHQARECTKGSICYNCNQ 43



 Score = 26.2 bits (55), Expect = 2.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 107 DNNLCPNCLRPGHSVSNC 54
           D  LC  C +PGH   NC
Sbjct: 155 DGQLCYKCNQPGHIAVNC 172


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = -1

Query: 137 NLQKKLKFVQDNN--LCPNCLRPGHS--VSNCRFGSCRKCNKRP 18
           N +++L  +  NN  LC NC +P +      C+   C KC   P
Sbjct: 296 NKKRRLSSLSTNNNHLCDNCHKPVNCEVEDTCKEAYCTKCIINP 339


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 62  SNCRFGSCRKCNKRPSC 12
           +NC  G C +CN   SC
Sbjct: 245 TNCNEGGCPRCNSASSC 261


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 116 FVQDNNLCPNCLRPGHSVS 60
           F++D N+CP C++P   VS
Sbjct: 608 FMRDANVCPICMQPIELVS 626


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 265 TLDVGTCIYALLLVLCVTNNVSNMSALFLRKVITLSTLTAGVVCLEV 405
           T ++ + I+  ++  CV   ++ M  + LRK   LST+   ++C  V
Sbjct: 685 TGELWSTIFLRMIFGCVIMQLTMMGLMSLRKAYWLSTVIFPLLCFTV 731


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 328  SNMSALFLRKVITLSTLTAGVVCLEVSPLLTAGME 432
            +N   L L+ ++  ST TA  +   +SPLLT+G++
Sbjct: 953  TNFCILILQLLLN-STATASNILESLSPLLTSGLK 986


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -1

Query: 101 NLCPNCLRPGHSVSNCRFGSCRKCN 27
           NLC  C+      +NC F  C   N
Sbjct: 181 NLCYECIESDELRANCPFTDCNSIN 205


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 205 FLYCCCELFVVSDTGD-TWQWTLDVGTCIYALLLVLCVTN 321
           +L  CC LFV   +GD      L   TC  + +L+L V++
Sbjct: 171 WLIICCILFVYIKSGDLILNKALICSTCTISAVLLLIVSS 210


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 434 SSIPAVSSGDTSKQTTPAVKVDNVITFLKNRADMLETLLVTHSTNNKAYIQ 282
           S IP+ +  D + Q +PA   +N+    KN A+   T +      +  YIQ
Sbjct: 189 SKIPSSTPKDDNVQESPAFPDENITALQKNVANF--TSIKDSGGRDNLYIQ 237


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 299 NKAYIQVPTSKVHCHVSPVSL-TTNSSQQQYKKP 201
           N+ Y ++P+  + C V   S+ TT  ++Q+   P
Sbjct: 455 NQLYSEIPSRLIRCEVEDRSIYTTTDAEQKLVTP 488


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -1

Query: 194 CLLCENYHPLYTCQSFIDFNLQKKLKFVQDNNLCP 90
           CL+CE+Y    +C S +  +    L+  ++ +  P
Sbjct: 227 CLVCEDYDLCSSCVSHVHHDHHSMLRLTREISASP 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,831,281
Number of Sequences: 5004
Number of extensions: 35997
Number of successful extensions: 116
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)