Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1055
         (437 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    29   0.030
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    26   0.21 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   0.64 
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    24   0.64 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   1.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.9  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    22   2.6  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 28.7 bits (61), Expect = 0.030
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 137 NLQKKLKFVQDNNLCPNCLRPGHSVSNCRFGSCRKCNKRPSCRI 6
           N + K  F QD+ LCP  L+  H +         +CNKR +C I
Sbjct: 441 NSKTKCCFAQDDGLCPYTLK--HKIRVPPGTPIYECNKRCNCDI 482


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.8 bits (54), Expect = 0.21
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = -2

Query: 319 WLHIALTIKRIYKCLRLRSTAMCLQYHSLQIVHNNNIKNHALAYYARIIIHYTLVNLLLT 140
           WL    T + I   + L    +C+     Q+ HN+    + L YY R  +  ++  L+LT
Sbjct: 275 WLDSRSTERMIAASVNLICHILCMSDLHWQLPHNSTNPPNILLYY-RDSLALSVFALILT 333

Query: 139 LIYKK 125
            + +K
Sbjct: 334 ALLRK 338



 Score = 20.6 bits (41), Expect = 7.9
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 164 YTCQSFIDFNLQKKLKFVQDNNLCPNCLRP 75
           YT  S  DF + K  K ++    CPN   P
Sbjct: 211 YTNNSKWDFKVIKATKVLKMYACCPNDTYP 240


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 316 TNNVSNMSALFLRKVITLSTLTAGVVCLEVSPLLTAGMEL 435
           TNN SN S L + +   +ST +   + LE       GMEL
Sbjct: 728 TNNTSNNSQLQIPRASLVSTTSVKSLRLEGDETPPYGMEL 767



 Score = 22.6 bits (46), Expect = 1.9
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -1

Query: 320 LVTHSTNNKAYIQVPTSKVHCHVSPVSLTTNSSQQQYKKPRACLLCE-NYHPLYTCQS 150
           L T++T+N + +Q+P + +   VS  S+ +   +     P    L E  ++ LYT  +
Sbjct: 726 LTTNNTSNNSQLQIPRASL---VSTTSVKSLRLEGDETPPYGMELTEAEHYALYTAMA 780


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
 Frame = -1

Query: 158 CQSFIDFNLQKKLKF-VQDNNLCPNCLRPGHSVSNCRFGSCRKCNKRPSCRIP 3
           C+ F   ++ K   +  +  N C   +        CR   C     RP C +P
Sbjct: 4   CKGFFRRSITKNAVYQCKYGNNCEIDMYMRRKCQECRLKKCLTVGMRPECMVP 56


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
 Frame = -1

Query: 158 CQSFIDFNLQKKLKF-VQDNNLCPNCLRPGHSVSNCRFGSCRKCNKRPSCRIP 3
           C+ F   ++ K   +  +  N C   +        CR   C     RP C +P
Sbjct: 207 CKGFFRRSITKNAVYQCKYGNNCEIDMYMRRKCQECRLKKCLTVGMRPECVVP 259


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 246 WRHMAVDLRRRHLYIRFIVS 305
           W+++A+ + R  LYI F+V+
Sbjct: 471 WKYVAMVIDRLQLYIFFLVT 490


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 113 VQDNNLCPNCLRPGHSVSNCRFGSC 39
           V D+    NCL  G +  +C  G C
Sbjct: 55  VNDSACAANCLSLGKAGGHCEKGVC 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,168
Number of Sequences: 438
Number of extensions: 2655
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)