Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1054
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    52   5e-08
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    27   2.8  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   2.8  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    25   6.5  
SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces po...    25   8.6  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    25   8.6  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 52.4 bits (120), Expect = 5e-08
 Identities = 24/59 (40%), Positives = 35/59 (59%)
 Frame = -1

Query: 594 VGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVAL 418
           + +KYALD+D  +  KIN+  +  L Y Q +RPGVT+ L   +D Q      HK G++L
Sbjct: 220 LASKYALDKDTFVKGKINSAGVATLSYFQTVRPGVTVGLGLQLDTQRLGQPAHKAGLSL 278


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = -3

Query: 520 WLPTETTPRRNPYIVCCHRWTELQCRWPQGWRCPRTRALENITQPTLVDKYILLSQPNS 344
           W    T PR       C + T+++ + PQ    P T  L    +   +D +  L  PNS
Sbjct: 145 WEGNLTNPRSEQPHTPCKKGTKIKLKPPQSPLSPTTSLLARKCKHIDLDTFSRLDHPNS 203


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = -2

Query: 554 TPRSTTSPSSVLVT-NRNYAQA*PLHCLLPSMDRTSMQVA-TRLALPSNSSPRKYNPTY 384
           +PR+T +PS+   + N N   +   +    +   T + +A ++ +LPSNS+P K N ++
Sbjct: 263 SPRNTPTPSNNGTSINANVTSSLTSNSTGKTSKTTDLLIAASKKSLPSNSTPSKPNTSF 321


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 312 ISTILIDSLYTLFGCDNSMYLSTRVGWVIF 401
           I+ ++ID  Y L G   SMY +T   W+++
Sbjct: 372 ITAVIIDFFYYLAGYLQSMYFTTYT-WILY 400


>SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 167

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 172 IKSRVRLYFDANCLQTFRKS**NSLTAFLG-KQERNI 279
           +K  + LYF A+CL TF  S     T ++  K+ER+I
Sbjct: 66  LKYLLPLYFLASCLLTFWSSVVKGSTVYVATKKERHI 102


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 598 RSWSEVRAGPRRVSARQDQQQVPHR 524
           R WSE+  G ++    +D+ +VP +
Sbjct: 534 RKWSEINDGLQQKKEEEDEDEVPSK 558


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,414,372
Number of Sequences: 5004
Number of extensions: 48473
Number of successful extensions: 91
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)