Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG1054
(606 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0491 - 29763738-29764044,29764266-29764474,29764565-297646... 40 0.002
05_06_0213 + 26414613-26414695,26416907-26417077,26417983-264182... 37 0.011
01_06_0090 + 26358051-26359157,26359582-26359701,26359968-263600... 29 2.9
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 29 3.8
01_01_1200 - 9670109-9670165,9670569-9670664,9670886-9670969,967... 29 3.8
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172... 28 6.6
01_01_0098 + 744582-745380,746107-746130,746500-747569 27 8.7
>01_06_0491 -
29763738-29764044,29764266-29764474,29764565-29764654,
29764819-29764905,29765598-29765733,29766036-29766186,
29766334-29766502
Length = 382
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/62 (35%), Positives = 36/62 (58%)
Frame = -1
Query: 591 GAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALEL 412
G ++ALD ++ A+ NN ++ Q + RP LTLSA +D + + KVG++L L
Sbjct: 322 GMQHALDPLTTVKARYNNHGMVSALIQHEWRPKSFLTLSAEVDTKAIDKAS-KVGLSLVL 380
Query: 411 EP 406
+P
Sbjct: 381 KP 382
>05_06_0213 +
26414613-26414695,26416907-26417077,26417983-26418219,
26418543-26418572,26419248-26419282,26421680-26421747,
26423067-26423126,26423310-26423399,26423487-26423695,
26424083-26424383
Length = 427
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/62 (30%), Positives = 35/62 (56%)
Frame = -1
Query: 591 GAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALEL 412
G ++ALD+ ++ A+ NN + Q + RP +T+S +D + + KVG++L L
Sbjct: 367 GTQHALDELTTVKARFNNFGMASALIQHEFRPKSLVTISTEVDTKAIDKSS-KVGLSLVL 425
Query: 411 EP 406
+P
Sbjct: 426 KP 427
>01_06_0090 +
26358051-26359157,26359582-26359701,26359968-26360099,
26360194-26360375,26360488-26360602,26362001-26362135,
26362261-26362395
Length = 641
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Frame = -2
Query: 452 SMQVATRLALPSNSSPR-----KYNPTYSCR*IHTVVTTKQR 342
S ++R++LPS S+P +PTYSC TV T + R
Sbjct: 221 SYSASSRVSLPSTSAPSPSSSTSTSPTYSCSSSDTVTTPRNR 262
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 403 ENITQPTLVDKYILLSQPNSVYRESISIVEI 311
E + + T+VDK I LS PNSV + + E+
Sbjct: 141 EGVAEATIVDKQIPLSGPNSVVGRAFVVHEL 171
>01_01_1200 -
9670109-9670165,9670569-9670664,9670886-9670969,
9671050-9671118,9671892-9671993,9672807-9672872,
9673791-9673841,9673953-9674048,9674141-9674279,
9674343-9674424,9674528-9674723
Length = 345
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 591 GAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAID 463
G Y L Q L KI+ ++ +++L PGV LSA +D
Sbjct: 288 GYDYMLRQ-CRLRGKIDTNGVVSALLEERLTPGVNFVLSAELD 329
>11_01_0221 -
1720952-1721164,1721351-1721428,1721836-1721895,
1721996-1722099,1722214-1722372,1722668-1722794,
1723469-1723636,1723789-1723899,1723989-1724142,
1724308-1724643,1724753-1724937,1725040-1725138,
1725275-1725538,1725674-1725850,1726249-1726542,
1726649-1726816,1727473-1727817,1727901-1728070,
1728171-1728321,1729193-1729262,1729353-1729537,
1729896-1729989,1730094-1730212,1730558-1730617,
1730744-1730830,1732348-1732434,1732622-1732730,
1732822-1732900,1733067-1733154,1733328-1733392,
1734287-1734439,1735231-1735337,1735419-1735501,
1735643-1735733,1735812-1735948,1736118-1736207,
1736301-1736468,1736875-1737057
Length = 1805
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -2
Query: 485 LHCLLPSMDRTSMQVA 438
LHCLLPS++R S Q A
Sbjct: 722 LHCLLPSINRNSSQAA 737
>01_01_0098 + 744582-745380,746107-746130,746500-747569
Length = 630
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 548 RSTTSPSSVLVTNRNYAQA*PLHCLLPS 465
R TTS S LV+ R Y A PL C++ S
Sbjct: 173 RDTTSHFSYLVSTRLYLYALPLDCMVVS 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,523,467
Number of Sequences: 37544
Number of extensions: 302411
Number of successful extensions: 720
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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