Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1054
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical pr...    42   5e-04
AL132948-42|CAN86925.1|  131|Caenorhabditis elegans Hypothetical...    30   1.1  
AL132948-41|CAC51075.1|  129|Caenorhabditis elegans Hypothetical...    30   1.1  
Z81587-6|CAB04704.1|  417|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AC006610-1|AAK85447.4|  360|Caenorhabditis elegans Hypothetical ...    29   3.4  
AL022274-1|CAA18357.1|  349|Caenorhabditis elegans Hypothetical ...    28   5.9  
AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen prot...    28   5.9  
U10438-6|AAA19087.1|  429|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical
           protein R05G6.7 protein.
          Length = 283

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 21/65 (32%), Positives = 35/65 (53%)
 Frame = -1

Query: 600 FGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVA 421
           + +  KYA  +D ++ AK+N+ S + +     L P + LTLS   +    +A  HK G+ 
Sbjct: 219 YALATKYAPSRDLTVRAKVNSSSQVAVAATHSLSPALKLTLSTQFNLAANDA--HKFGLG 276

Query: 420 LELEP 406
           LE +P
Sbjct: 277 LEFDP 281


>AL132948-42|CAN86925.1|  131|Caenorhabditis elegans Hypothetical
           protein Y39B6A.3b protein.
          Length = 131

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = -1

Query: 558 LHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALELEP 406
           L A+ N+ + + +G +QK   G+T TL  A D Q F+    + G+ + +EP
Sbjct: 40  LLAQQNDANALKIGVRQKGCNGLTYTLEYAKDKQKFDEEVEQDGIKVWIEP 90


>AL132948-41|CAC51075.1|  129|Caenorhabditis elegans Hypothetical
           protein Y39B6A.3a protein.
          Length = 129

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = -1

Query: 558 LHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALELEP 406
           L A+ N+ + + +G +QK   G+T TL  A D Q F+    + G+ + +EP
Sbjct: 38  LLAQQNDANALKIGVRQKGCNGLTYTLEYAKDKQKFDEEVEQDGIKVWIEP 88


>Z81587-6|CAB04704.1|  417|Caenorhabditis elegans Hypothetical
           protein T06G6.8 protein.
          Length = 417

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 22/78 (28%), Positives = 34/78 (43%)
 Frame = -2

Query: 581 TRWTKTRLCTPRSTTSPSSVLVTNRNYAQA*PLHCLLPSMDRTSMQVATRLALPSNSSPR 402
           T+ ++TR  T  STT+      T+  +A   P     PS    ++  AT   LP+  S R
Sbjct: 238 TKPSRTRSLTSTSTTTAKLPTTTSTTFAA--PQASTEPSEATEALATATPADLPTKPSGR 295

Query: 401 KYNPTYSCR*IHTVVTTK 348
           +       R + +  TTK
Sbjct: 296 EITTITGTRKLSSTSTTK 313


>AC006610-1|AAK85447.4|  360|Caenorhabditis elegans Hypothetical
           protein C30F12.1 protein.
          Length = 360

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -2

Query: 545 STTSPSSVLVTNRNYAQA*PLHCLLPSMDRTSMQVATRLALPSNSSPRKYNPTYSCR 375
           S  SP  ++ ++ + + A       P   R S+ +AT     S+S+P KYNP  S R
Sbjct: 172 SRNSPEPIMTSSASSSSASSSSSHRPI--RQSVSIATSSPATSSSTPSKYNPDPSLR 226


>AL022274-1|CAA18357.1|  349|Caenorhabditis elegans Hypothetical
           protein H24D24.1 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 370 YILLSQPNSVYRESISIVEITCIVPGAFKTQYSFPAF 260
           Y+LL+ P+  YR   SI+   CI P ++ + + F  F
Sbjct: 79  YVLLALPDYHYRYQKSIMSSICIPPPSYASCFLFVHF 115


>AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen protein
           70 protein.
          Length = 530

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = -2

Query: 605 HYSELERSTRWTKTRLCTPRSTTSPSSVLVTNRNYAQA*PLHCLLPSMDRTSMQVATRLA 426
           HY  +  + + T    CTPR+TT+ ++   T      A P     P+   T+       A
Sbjct: 272 HYETVPPAAQTTPQPPCTPRTTTTTTTTTTTT-----ALPPCVYTPAPPATAPPAT---A 323

Query: 425 LPSNSSPRKYNPT 387
            P+  +PR Y+ T
Sbjct: 324 TPATQTPRTYSTT 336


>U10438-6|AAA19087.1|  429|Caenorhabditis elegans Hypothetical
           protein B0280.9 protein.
          Length = 429

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = -2

Query: 455 TSMQVATRLALPSNSSPRKYNPTYSCR*IHTVVTTKQRV 339
           TSM+  T ++LP+N+S  K+ P++S R I  +  T Q V
Sbjct: 241 TSMEHITTISLPANASEIKFFPSHS-REIWIICETGQIV 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,411,859
Number of Sequences: 27780
Number of extensions: 271590
Number of successful extensions: 614
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)