Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1054
         (606 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15090.1 68418.m01768 porin, putative / voltage-dependent ani...    40   0.001
At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34...    38   0.005
At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34...    33   0.11 
At1g05080.1 68414.m00510 F-box family protein contains F-box dom...    29   3.2  
At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN ...    28   4.2  
At2g30575.1 68415.m03725 glycosyl transferase family 8 protein c...    28   4.2  
At2g27770.1 68415.m03365 expressed protein                             28   4.2  
At1g04440.1 68414.m00435 casein kinase, putative similar to case...    28   4.2  
At3g04460.1 68416.m00473 Pex2/Pex12 N-terminal domain-containing...    27   7.3  
At4g38200.1 68417.m05392 guanine nucleotide exchange family prot...    27   9.6  

>At5g15090.1 68418.m01768 porin, putative / voltage-dependent
           anion-selective channel protein, putative similar to
           SP|P42055 34 kDa outer mitochondrial membrane protein
           porin (Voltage-dependent anion-selective channel
           protein) (VDAC) {Solanum tuberosum}; contains Pfam
           profile PF01459: Eukaryotic porin; identical to cDNA
           voltage-dependent anion-selective channel protein
           GI:4006940
          Length = 274

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 21/63 (33%), Positives = 35/63 (55%)
 Frame = -1

Query: 594 VGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALE 415
           VG ++ALD   ++ A++NN  +     Q + RP    T+S  +D +  +    KVG+AL 
Sbjct: 213 VGTQHALDPLTTVKARVNNAGVANALIQHEWRPKSFFTVSGEVDSKAIDKSA-KVGIALA 271

Query: 414 LEP 406
           L+P
Sbjct: 272 LKP 274


>At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 276

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 20/63 (31%), Positives = 35/63 (55%)
 Frame = -1

Query: 594 VGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALE 415
           VG  YA+D   ++ AK+NN   +G   Q ++ P   +T+S+ ID +       + G++L 
Sbjct: 215 VGGLYAIDHSTAVKAKLNNHGTLGALLQHEVLPRSLVTVSSEIDTKALEK-HPRFGLSLA 273

Query: 414 LEP 406
           L+P
Sbjct: 274 LKP 276


>At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 226

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 20/67 (29%), Positives = 35/67 (52%)
 Frame = -1

Query: 606 TLFGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVG 427
           T   VG  YA+D   ++ AK+N+    G   Q +  P   +T+S  ID +  +    ++G
Sbjct: 161 TTVTVGGLYAVDHLTNVKAKLNSNGKFGALLQHEGLPKSIVTISGEIDTKTLDK-YPRLG 219

Query: 426 VALELEP 406
           ++L L+P
Sbjct: 220 LSLSLKP 226


>At1g05080.1 68414.m00510 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 439

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/48 (33%), Positives = 32/48 (66%)
 Frame = -3

Query: 400 NITQPTLVDKYILLSQPNSVYRESISIVEITCIVPGAFKTQYSFPAFL 257
           ++++ TL D+ IL++ P+S Y  S++ +E+ C+V   +K + S  +FL
Sbjct: 141 SLSELTLSDQ-ILVNVPSSAYLPSLTELELICVV---YKDEDSLVSFL 184


>At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN
           protein (ETT) identical to ETTIN GB:AF007788 from
           [Arabidopsis thaliana]
          Length = 608

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -2

Query: 566 TRLCTPRSTTSPSSVLVTNRN 504
           TR+  P  ++SPSSVL+TN N
Sbjct: 514 TRILPPSVSSSPSSVLLTNSN 534


>At2g30575.1 68415.m03725 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 610

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 418 RTRALENITQPTLVDKYILLSQPNSVYRESISIVEIT 308
           RT+ LE  T  T  DKY+  S PN +    +++ +++
Sbjct: 207 RTKELERATGDTTKDKYLPKSSPNRLKAMEVALYKVS 243


>At2g27770.1 68415.m03365 expressed protein
          Length = 320

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 272 LSCFPKNAVRLFH*LFLNVCKQFASKYSLTRLLINKS 162
           +SCF +N++ + H L ++      SKYS   + I+ S
Sbjct: 5   VSCFSENSINVTHPLSISSSSSSCSKYSTNNVCISPS 41


>At1g04440.1 68414.m00435 casein kinase, putative similar to casein
           kinase I [Arabidopsis thaliana] gi|1103318|emb|CAA55395;
           contains protein kinase domain, Pfam:PF00069
          Length = 468

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = -2

Query: 560 LCTPRSTTSPSSVLVTNRNYAQA*PLHCLLPSMDRTSMQVATRLALPSNSSPRKYNPTYS 381
           L + R   + SSV  T+        L  L+P+ DR+S  + T+ A  S+S   K  PT +
Sbjct: 389 LSSSRKAIAGSSVRATSSADFTENRLSRLIPNNDRSSTTLRTQFAPSSSSVATKAAPTRA 448

Query: 380 CR 375
            R
Sbjct: 449 AR 450


>At3g04460.1 68416.m00473 Pex2/Pex12 N-terminal domain-containing
           protein similar to SP|O00623 Peroxisome assembly protein
           12 (Peroxin-12) (Peroxisome assembly factor-3) (PAF-3)
           {Homo sapiens}; contains Pfam profile PF04757: Pex2 /
           Pex12 amino terminal region
          Length = 393

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 368 VFIYKSRLGYIF*GSSSRATPTLWPPALKF-CPSMAADNVRVTPGRSFC 511
           VFI+K    +        + PT++PP      P MA + + + P RS C
Sbjct: 291 VFIFKMMEWWYQSAEERLSAPTVYPPPPPPPAPKMAKEGIPLPPDRSLC 339


>At4g38200.1 68417.m05392 guanine nucleotide exchange family protein
           similar to Brefeldin A-inhibited guanine
           nucleotide-exchange protein 2 [Homo sapiens] SP|Q9Y6D5;
           contains Pfam profile PF01369: Sec7 domain
          Length = 1698

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 412 RALENITQPTLVDKYILLSQPNSVYRESISIVEI 311
           R LEN+ QP+ V K  +LS   ++  +   I++I
Sbjct: 395 RVLENVLQPSFVQKMTVLSLLENICHDPNLIIDI 428


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,486,807
Number of Sequences: 28952
Number of extensions: 247056
Number of successful extensions: 606
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)