Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1053
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ...    64   1e-11
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    29   0.61 
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...    29   0.61 
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    28   0.81 
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    26   3.3  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    26   4.3  

>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 227

 Score = 64.5 bits (150), Expect = 1e-11
 Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 21/156 (13%)
 Frame = +3

Query: 126 ITLAVAAGLYYLAEIVEDNTVFAKQVITYAVFTTAVIHVCLMIFEEIPLQMNXXXXXXXX 305
           +T+++A+ LYY++E VE+++  AK  +   V+    + V L+IF+  P  ++        
Sbjct: 19  MTVSIASALYYISEFVEEHSRLAKAFLCRLVYFIMAVMVFLVIFDGFPFWLSAFSIFSHY 78

Query: 306 XXXXXXRDFPAVRVTSFSFLTALMTLAVHHYLAFKYF----------GAVY--------- 428
                   FP        FL A   +  +H L  ++F          G  Y         
Sbjct: 79  IYKINFDTFPFFSFKRMRFLLACFLIVANHILWVRFFQVHEFPIKPRGLTYDFVGQRLLT 138

Query: 429 --YAFSEVLAYFTLCLWVVPFGLFVSLSANDYVLPT 530
              +FS+V ++  +C+W VP G+FVS +A D  LPT
Sbjct: 139 SRASFSQVASFMGVCVWSVPIGIFVSFTAADNTLPT 174


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 423 VYYAFSEVLAYFTLC--LWVVPFGLFVSLSANDYVLPT 530
           + YAF + + Y  LC  +W+  F  F+S+S     L T
Sbjct: 317 IAYAFEQAMLYVPLCPQIWLDGFSYFLSISDEQRALQT 354


>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 177 DNTVFAKQVITYAVFTTAVIHVCLMIFEEIPL 272
           DN  FAKQVI  A  T A++ V L   +EI L
Sbjct: 70  DNIFFAKQVINNACATQALLSVLLNHSDEIDL 101


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 28.3 bits (60), Expect = 0.81
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -2

Query: 242 YVDDCGGEYSIRDDLFSKHCIIFYNLGQII 153
           Y+D C  E S  DDL SKH  +FY + Q I
Sbjct: 432 YLDQCENELS--DDLLSKHS-VFYAINQSI 458


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 259 SNIIRHTWMTAVVNTAYVMTCLANTVLS 176
           +NI  H W   V   A  M C+AN++++
Sbjct: 226 NNIALHFWSVTVPQFAQSMPCIANSLMA 253


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = -2

Query: 503 EGHEKTEGNHP*TEREVGQHLRKSVVHRSEVLEGQIMMNRERHQCSQETEAGHPDRGEVP 324
           EG    + + P  +    +HLRK  +   +  EGQ    +E     Q TE  H  +  +P
Sbjct: 719 EGQHTRQESLPSQQTTETKHLRKESIPSKQPTEGQ-HARQESLPSQQTTETKHLRKESIP 777

Query: 323 QQK 315
            ++
Sbjct: 778 SKQ 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,154,287
Number of Sequences: 5004
Number of extensions: 41573
Number of successful extensions: 114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)