Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1053
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1591 + 27967065-27967090,27967236-27968054,27984940-279850...    30   1.4  
06_03_1069 - 27345207-27345488,27345746-27346078,27346252-273470...    28   4.4  
06_02_0133 + 12176059-12176238,12177244-12177362,12177515-121776...    28   5.8  
07_03_1090 + 23891294-23892222,23892317-23892516,23895241-238954...    27   7.7  
01_01_0707 - 5453933-5454619                                           27   7.7  

>07_03_1591 + 27967065-27967090,27967236-27968054,27984940-27985022,
            27985590-27985744,27985956-27986461,27986551-27986703,
            27987146-27987485,27987558-27987822,27987897-27988634,
            27989734-27989779,27989849-27990223,27991511-27991567,
            27991640-27992438
          Length = 1453

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +2

Query: 338  GPGDQLQFLDCTDDARGSSLSGLQVLRSGVLR-FFGGAGLLHALSMGGSLRSFRVPLSKR 514
            GPG      D TD+A+ ++   L V R G L  F+  AG+L +++    L S  +    R
Sbjct: 1236 GPGATYTRCDVTDEAQVAAAVDLAVARHGALDVFYSNAGVLGSIA-PAPLASLDLGEFDR 1294

Query: 515  LRATNDRREAPA 550
            + A N R    A
Sbjct: 1295 VMAVNARAAVAA 1306


>06_03_1069 -
           27345207-27345488,27345746-27346078,27346252-27347041,
           27347153-27347351,27347522-27347667,27347823-27348094,
           27348161-27348262,27348351-27348470,27348576-27348729,
           27348986-27349114,27349554-27349900
          Length = 957

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +3

Query: 111 IQGVFITLAVAAGLYYLAEIVEDNTVFAKQVITYAVFTTAVIHVCLMIFEEI 266
           ++  + TL  AAGL  L++ VED  VF+   +  A  T A +  CL    E+
Sbjct: 202 MEAAYATLQDAAGLAQLSQSVED--VFSSGDLPKAAETLATMRHCLSAVGEV 251


>06_02_0133 +
           12176059-12176238,12177244-12177362,12177515-12177612,
           12177811-12177870,12177920-12177990,12178082-12178276,
           12178395-12178441,12178532-12178598,12178660-12178665,
           12178689-12178789,12179014-12179115,12179182-12179323,
           12179578-12179661,12179760-12180080
          Length = 530

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 390 HHYLAFKYFGAVYYAFSEVLAYFTLCLWVVPFGLFVSLSANDYV 521
           H++L    FG ++  F  V    T C W+ P   F  L A DY+
Sbjct: 110 HNFLTIMSFG-IFGVFISVAIVSTGCYWLFPKVGFGDLGAVDYL 152


>07_03_1090 +
           23891294-23892222,23892317-23892516,23895241-23895482,
           23895771-23896461,23896486-23896562
          Length = 712

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 477 PPIDRA*SRPAPPKKRSTPLRST*RPDNDEPRAS 376
           PP+ R  S+P PP   + PL +T    ++E +A+
Sbjct: 145 PPLKRPESQPPPPPPSTPPLTTTGYSTDEEDQAT 178


>01_01_0707 - 5453933-5454619
          Length = 228

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
 Frame = +2

Query: 218 IHHRSHPRMSNDIRGDP---PPDE-HPRSD 295
           +HH  HP  S      P   PPDE HPR +
Sbjct: 129 MHHHKHPSSSTSTSSPPAAPPPDEHHPRHE 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,474,522
Number of Sequences: 37544
Number of extensions: 295263
Number of successful extensions: 898
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)