Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1053
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15463| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.069
SB_46012| Best HMM Match : Pigment_DH (HMM E-Value=1.5)                29   1.9  
SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)                   28   4.5  
SB_19422| Best HMM Match : Mnd1 (HMM E-Value=4.3)                      28   4.5  
SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23)                  27   7.9  
SB_44503| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_43900| Best HMM Match : ResIII (HMM E-Value=0.53)                   27   7.9  
SB_19705| Best HMM Match : zf-C2H2 (HMM E-Value=6e-07)                 27   7.9  

>SB_15463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 34.3 bits (75), Expect = 0.069
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 412 TSERCTTLFRRCWPTSRSVYGWFPSVFSCPSQQTT-TCYQRQKR 540
           TS R T   RRC   S  + GW  SV  C ++ T+  CY ++++
Sbjct: 86  TSRRLTLPLRRCKIASLKIRGWLLSVEHCGNEMTSPLCYDKKRK 129


>SB_46012| Best HMM Match : Pigment_DH (HMM E-Value=1.5)
          Length = 265

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 232 TAVVNTAYVMTCLANTVLSSTI 167
           TA+VNTA V T + NTV+ +T+
Sbjct: 43  TAIVNTAIVNTAIVNTVIVNTV 64



 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 232 TAVVNTAYVMTCLANTVLSSTI 167
           TA+VNTA V T + NTV+ +T+
Sbjct: 83  TAIVNTAIVNTAIVNTVIVNTV 104



 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 232 TAVVNTAYVMTCLANTVLSSTI 167
           TA+VNTA V T + NTV+ +T+
Sbjct: 108 TAIVNTAIVNTVIVNTVIVNTV 129



 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 232 TAVVNTAYVMTCLANTVLSSTI 167
           TA+VNTA V T + NTV+ +T+
Sbjct: 48  TAIVNTAIVNTVIVNTVIVNTL 69



 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 232 TAVVNTAYVMTCLANTVLSSTISAR*YKPAATARVINT 119
           TA+VNTA V T + NT + +T  A  Y       ++NT
Sbjct: 188 TAIVNTAIVNTAIVNTAIVNT--AIVYTAIVNTAIVNT 223



 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 232 TAVVNTAYVMTCLANTVLSSTISAR*YKPAATARVINT 119
           TA+VNTA V T + NT + +T  A  Y       ++NT
Sbjct: 213 TAIVNTAIVNTAIVNTAIVNT--AIVYTAIVNTAIVNT 248



 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -3

Query: 232 TAVVNTAYVMTCLANTVLSST 170
           TA+VNTA V T + NTV+ +T
Sbjct: 88  TAIVNTAIVNTVIVNTVIVNT 108



 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 232 TAVVNTAYVMTCLANTVLSSTI 167
           T +VNTA V T + NTV+ +T+
Sbjct: 103 TVIVNTAIVNTAIVNTVIVNTV 124



 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 232 TAVVNTAYVMTCLANTVLSSTIS 164
           TA+VNTA V T + NT + +T S
Sbjct: 238 TAIVNTAIVNTAIVNTAIVNTAS 260



 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 232 TAVVNTAYVMTCLANTVLSSTI 167
           TA+VNT  V T + NTV+ +T+
Sbjct: 113 TAIVNTVIVNTVIVNTVIVNTV 134


>SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1612

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -2

Query: 404  GQIMMNRERHQCSQETEAGHPDR----GEVPQQKQVQKL 300
            GQI   +E  Q  Q+ EAGH D     G++ +QK+  ++
Sbjct: 1485 GQISEQKESKQIDQQKEAGHTDEHKEAGQINKQKEAGQI 1523


>SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)
          Length = 1199

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 492  KDRREPPIDRA*SRPAPPKKRS 427
            KD++E P+ R   R +PP++RS
Sbjct: 1034 KDKKEKPLGRGEGRESPPRRRS 1055


>SB_19422| Best HMM Match : Mnd1 (HMM E-Value=4.3)
          Length = 386

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = -2

Query: 461 REVGQHLRKSVVHRSEVLEGQIMMNRERHQCSQETEAGHPDRGEVPQQKQVQKLLY 294
           RE G+ +        E  E  + + +++   ++  + G PD GEV  Q+Q   + Y
Sbjct: 312 RESGKSINNYKPKTIESYEETLKLLQQKRMEAKTAKQGEPDSGEVKSQEQKTNITY 367


>SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23)
          Length = 553

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 417 GAVYYAFSEVLAYFTLCLWVVPFGLFVSLSANDYVLPT 530
           G +  A    L   TL ++ VP GLFV L +  +++PT
Sbjct: 162 GLLEVACLSYLCLCTLTVYDVPLGLFVLLMSALFIIPT 199


>SB_44503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1347

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 173  RR*YSVC*TSHHVCCIHHRSHPRMSNDIRGDPPPDEHP 286
            R+ Y    +S+ +CCIH     R  + I    PPD  P
Sbjct: 1205 RKTYPTIASSNPLCCIHRHLRVRHDDQIGRVIPPDNAP 1242


>SB_43900| Best HMM Match : ResIII (HMM E-Value=0.53)
          Length = 540

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 206 HVCCIHHRSHPRMSNDIRGDPPPDEHP 286
           H CC+H     R+++ I    PPD+ P
Sbjct: 406 HECCVHRHLPVRLADQIVRVIPPDDTP 432


>SB_19705| Best HMM Match : zf-C2H2 (HMM E-Value=6e-07)
          Length = 503

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 498 TRKDRREPPIDRA*SRPAPPKKRSTPLRST 409
           T  +R  P      +RPAPPK+R+ PL  +
Sbjct: 363 TVAERHIPKCANTTNRPAPPKQRAIPLEGS 392



 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 498 TRKDRREPPIDRA*SRPAPPKKRSTPLRST 409
           T  +R  P      +RPAPPK+R+ PL  +
Sbjct: 451 TVAERHIPKCANTTNRPAPPKQRAIPLEGS 480


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,534,221
Number of Sequences: 59808
Number of extensions: 333560
Number of successful extensions: 1559
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1549
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)