Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1053
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   1.6  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   8.4  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -2

Query: 437 KSVVHRSEVLEGQIMMNRERHQCSQETEAGHPDRGEVPQQKQVQK 303
           KS+ HR      Q     E+ +  +  +  H DR    QQ+Q Q+
Sbjct: 52  KSIYHRQHSKNEQQRKEMEQMREREREQREHSDRVTSQQQQQQQQ 96


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 482 GNHP*TEREVGQHLRKSVVHRSEVLEGQIMMNRE 381
           G++  T   +    RK +VH  + LE  +M NR+
Sbjct: 60  GSNKKTRHMLPTGFRKVLVHNVKELEVLMMQNRK 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,788
Number of Sequences: 438
Number of extensions: 3170
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)