Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1053
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25750.1 68417.m03707 ABC transporter family protein Bactroce...    31   0.69 
At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)           30   1.2  
At5g51540.1 68418.m06391 peptidase M3 family protein / thimet ol...    29   2.1  
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    29   2.8  
At5g51430.1 68418.m06376 conserved oligomeric Golgi complex comp...    27   6.4  
At3g49710.1 68416.m05435 pentatricopeptide (PPR) repeat-containi...    27   8.5  

>At4g25750.1 68417.m03707 ABC transporter family protein Bactrocera
           tryoni membrane transporter (white) gene, PID:g3676298
          Length = 577

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
 Frame = +3

Query: 360 FLTALMTLAVHHYLAFKYFGAVYYAFSEVLAYFTLCLWVV-----PFGLFVSLSANDYVL 524
           FL  L+ +A+ + ++  +   + +++ + LAYF L +W++      F LF+S  A +Y+ 
Sbjct: 401 FLPYLLLIAIIYSVSLYFLVGLCFSW-QALAYFVLVIWIIVLMANSFVLFLSSLAPNYIA 459

Query: 525 PTT 533
            T+
Sbjct: 460 GTS 462


>At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)
          Length = 638

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -2

Query: 443 LRKSVVHRSEVLEGQIMMNRERHQCSQETEAGHPDRG 333
           L K    R  +LE  +  NR  HQ   E EA  P RG
Sbjct: 467 LTKGETPRLRLLEQSLRQNRAFHQMGMEQEAWRPQRG 503


>At5g51540.1 68418.m06391 peptidase M3 family protein / thimet
           oligopeptidase family protein low similarity to
           SP|Q99797 Mitochondrial intermediate peptidase,
           mitochondrial precursor (EC 3.4.24.59) {Homo sapiens};
           contains Pfam profile PF01432: Peptidase family M3
          Length = 860

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 95  LFISFYSRSVYYPGCSRWLILSGR 166
           L++  YSR   YPGC+ + I  GR
Sbjct: 429 LYLDLYSRKGKYPGCASFAIRGGR 452


>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/38 (44%), Positives = 25/38 (65%)
 Frame = -2

Query: 362 ETEAGHPDRGEVPQQKQVQKLLYQT*DVHLEGDLLEYH 249
           E E  + D GE+ + KQ+ K L +  +V LEG+LLEY+
Sbjct: 121 EVEMAYND-GELERLKQLVKELEER-EVKLEGELLEYY 156


>At5g51430.1 68418.m06376 conserved oligomeric Golgi complex
           component-related / COG complex component-related
           contains weak similarity to Conserved oligomeric Golgi
           complex component 7 (Swiss-Prot:P83436) [Homo sapiens]
          Length = 836

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +3

Query: 111 IQGVFITLAVAAGLYYLAEIVEDNTVFAKQVITYAVFTTAVIHVCLMIFEEI 266
           ++  + TL  AAGL  L+  VED  VFA   +  A  T A +  CL    E+
Sbjct: 117 MEAAYKTLQDAAGLTQLSSTVED--VFASGDLPRAAETLASMRNCLSAVGEV 166


>At3g49710.1 68416.m05435 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 721

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 174 EDNTVFAKQVITYAVFTTAVIHVCLMIFEEIP 269
           E+  VF+  VI  A    + IH+   +F+EIP
Sbjct: 70  EEPNVFSYNVIVKAYAKDSKIHIARQLFDEIP 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,343,462
Number of Sequences: 28952
Number of extensions: 225591
Number of successful extensions: 670
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)