Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1052
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0470 + 9629062-9629355,9629948-9630893,9630948-9631102,963...    30   1.7  
07_01_0279 + 2055310-2055541,2055916-2056235,2056734-2057213           28   7.0  
04_03_0260 - 13580396-13582990                                         27   9.2  
02_04_0376 - 22474473-22476947                                         27   9.2  
02_03_0030 - 14083117-14083166,14083620-14083689,14083777-140838...    27   9.2  

>09_02_0470 +
           9629062-9629355,9629948-9630893,9630948-9631102,
           9631299-9631358,9633374-9633444,9633626-9633663,
           9633824-9633876,9633970-9635235,9635632-9635672,
           9636821-9636887
          Length = 996

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +2

Query: 59  LVLTEDGAVLESGGELENDERIATIITDLITLSNEVDSVAFGPSENFKKISITFDDHWYI 238
           L+ T+   ++E    L   E+   II   +T S+EV +   G   ++K   ++ DD W I
Sbjct: 279 LISTDKNQLIELKEMLRGTEKCTKII---VTTSSEVSADLIGTVPSYKLHPLSDDDCWGI 335

Query: 239 IC 244
            C
Sbjct: 336 FC 337


>07_01_0279 + 2055310-2055541,2055916-2056235,2056734-2057213
          Length = 343

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 146 ITLSNEVDSVAFGPSENFKKISITFDDHWYIICLSNKK 259
           I +  E+D     PS+  K  ++  +  WY  CL  +K
Sbjct: 60  IEIIKEMDIYKHDPSDFLKTSTVGSEKEWYFFCLRGRK 97


>04_03_0260 - 13580396-13582990
          Length = 864

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 572 HPKPSVLPKQALLNGSRLRNN 510
           HP  +++P Q+LL G RLR N
Sbjct: 190 HPTDALVPGQSLLQGMRLRAN 210


>02_04_0376 - 22474473-22476947
          Length = 824

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 73  LCQHQVADLVWNFIHYLVPNSCSP 2
           LC+   AD+ W F+  +V   C+P
Sbjct: 453 LCKSGKADIAWKFLEKMVSAGCTP 476


>02_03_0030 -
           14083117-14083166,14083620-14083689,14083777-14083857,
           14083940-14084065,14084916-14085143,14085246-14085325,
           14086567-14086768,14086857-14086946
          Length = 308

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 370 ENASFNILIQILFRCITFIINAWVIRNVGHEILGIMN 480
           EN+S  ++I      +T ++N W  + + HE++GI N
Sbjct: 217 ENSSLLLVIDRRDDPVTPLLNQWTYQAMVHELIGIEN 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,631,992
Number of Sequences: 37544
Number of extensions: 255099
Number of successful extensions: 568
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)