Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1052
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57854| Best HMM Match : No HMM Matches (HMM E-Value=.)              65   4e-11
SB_39378| Best HMM Match : VWA (HMM E-Value=0)                         29   2.3  
SB_18890| Best HMM Match : OCIA (HMM E-Value=6.3)                      29   3.1  
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_25577| Best HMM Match : Mab-21 (HMM E-Value=1e-05)                  28   5.4  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_4989| Best HMM Match : Fibrinogen_C (HMM E-Value=0.13)              27   9.4  

>SB_57854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 562

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 30/97 (30%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
 Frame = +1

Query: 346 RNILMSSLENASFNILIQILFRCITFIINAWVIRNVGHEILGIMNVRXXXXXXXXXXXSR 525
           ++I+ S++ +AS+N+ +Q+ FR +TF +N  ++R +  ++LG++NVR           SR
Sbjct: 4   KSIVGSTVRSASYNVALQVTFRILTFFMNGILMRFISRDMLGVVNVRLVLLQQTITFVSR 63

Query: 526 EPFNRACLGRTDGFG---WSHLINQIWLSVPISSLLS 627
           E F ++CL ++       W  +IN +W   PI  + S
Sbjct: 64  EAFRKSCLTKSASGSEQHWPQVINLLWCVFPIGVVTS 100


>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2865

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/77 (24%), Positives = 30/77 (38%)
 Frame = +2

Query: 50   IGYLVLTEDGAVLESGGELENDERIATIITDLITLSNEVDSVAFGPSENFKKISITFDDH 229
            IG+L        +   G  +    +AT ++ L  +SN    +A     N+   S +FD H
Sbjct: 1713 IGFLFDGTKDVDMSYNGNFQQSLSLATTLSQLFDISNASARIAVAVYSNYTDSSFSFDSH 1772

Query: 230  WYIICLSNKKIYVVKRN 280
                 L N    +V  N
Sbjct: 1773 LTHASLRNAVEKIVYPN 1789


>SB_18890| Best HMM Match : OCIA (HMM E-Value=6.3)
          Length = 310

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/81 (24%), Positives = 39/81 (48%)
 Frame = +2

Query: 68  TEDGAVLESGGELENDERIATIITDLITLSNEVDSVAFGPSENFKKISITFDDHWYIICL 247
           T DG  ++  G L+ DE+++++    + +  + D V    S+N    ++T D    ++  
Sbjct: 141 TTDGVSIQYTGYLKKDEKLSSVDEPQLVIGGKYDRV----SKNDNLANLTTDAG--VVHT 194

Query: 248 SNKKIYVVKRNIHTPLRESNE 310
            N  +     + HTPL  SN+
Sbjct: 195 PNNGVDRELSSDHTPLMSSND 215


>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = +2

Query: 50   IGYLVLTEDGAVLESGGELENDERIATIITDLITLSNEVDSVAFGPSENFKKISITFDDH 229
            IG+L        +   G  +    +AT ++ L  +SN    +A     N+   S +FD H
Sbjct: 3439 IGFLFDGTKDVDMSYKGNFQQSLSLATTLSQLFDISNASARIAVAVYSNYTDSSFSFDSH 3498


>SB_25577| Best HMM Match : Mab-21 (HMM E-Value=1e-05)
          Length = 492

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 376 ASFNILIQILFRCITFIINAWVIRNVGHEILGIMN 480
           +S+ +    L++C    +N WV RNV   I+G+++
Sbjct: 412 SSYYLKTIFLWKCERMPMNVWVERNVAQVIMGLLD 446


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 22/91 (24%), Positives = 40/91 (43%)
 Frame = +2

Query: 14   IRHEVMDKIPDQIGYLVLTEDGAVLESGGELENDERIATIITDLITLSNEVDSVAFGPSE 193
            + ++  +K  D     VL E+   LE   +L  D  I  ++ D I +  +  S     +E
Sbjct: 2765 VENKYKEKASDSANVAVLREE---LEDIKKLRQDMGIQELVLDFINVKGQEFSGKVMENE 2821

Query: 194  NFKKISITFDDHWYIICLSNKKIYVVKRNIH 286
            +F+      +DHW      + K  V +R++H
Sbjct: 2822 HFELDLKATNDHW-----DSVKEQVSRRSLH 2847


>SB_4989| Best HMM Match : Fibrinogen_C (HMM E-Value=0.13)
          Length = 195

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 526 EPFNRACLGRTDGFGWSHLINQIWLSVPISSL 621
           +PF   C   TDG GW+ L N ++ S   +++
Sbjct: 46  QPFTVVCEMTTDGGGWTQLKNFVYGSTTFTTM 77


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,212,240
Number of Sequences: 59808
Number of extensions: 304470
Number of successful extensions: 766
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)