Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1052
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58748-4|AAB52967.1|  522|Caenorhabditis elegans Hypothetical pr...    50   1e-06
Z67882-2|CAA91799.1| 1318|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U00047-9|AAY43977.1|  293|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotei...    29   2.7  
Z82086-2|CAB04995.2|  309|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U23514-8|AAC46540.2|  467|Caenorhabditis elegans Hypothetical pr...    28   6.3  

>U58748-4|AAB52967.1|  522|Caenorhabditis elegans Hypothetical
           protein ZK180.3a protein.
          Length = 522

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 28/90 (31%), Positives = 49/90 (54%)
 Frame = +1

Query: 358 MSSLENASFNILIQILFRCITFIINAWVIRNVGHEILGIMNVRXXXXXXXXXXXSREPFN 537
           MS   +   N+  Q++ R I+F IN +++R + +++LG++NVR           +REP  
Sbjct: 1   MSLFSSLVHNVRGQLIARIISFAINMYLLRRINNDVLGLVNVRLTLLYSSILFLTREPLR 60

Query: 538 RACLGRTDGFGWSHLINQIWLSVPISSLLS 627
           +A + R         IN +WLS  IS+++S
Sbjct: 61  KAEIIRG---SLPKFINLLWLSPIISTVIS 87


>Z67882-2|CAA91799.1| 1318|Caenorhabditis elegans Hypothetical
           protein F22E10.1 protein.
          Length = 1318

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 20  HEVMDKIPDQIGYLVLTEDGAVLESGGELENDERIATIITD-LITLSNEVDSVAFGPSEN 196
           H+ + K+P+  GY  +  DG+V  SGG+ +      T+I D  + L +E  S     SE+
Sbjct: 535 HDFIQKMPN--GYETMIGDGSVQLSGGQKQRVAIARTLIRDPKVLLLDEATSALDAQSES 592


>Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical
           protein F22E10.3 protein.
          Length = 1327

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +2

Query: 20  HEVMDKIPDQIGYLVLTEDGAVLESGGELENDERIATIITD-LITLSNEVDSVAFGPSEN 196
           H+ ++K+P   GY  L  DG V  SGG+ +      T+I D  + L +E  S     SE+
Sbjct: 547 HDFIEKMPK--GYDTLIGDGGVQLSGGQKQRVAIARTLIRDPKVLLLDEATSALDAQSES 604


>U00047-9|AAY43977.1|  293|Caenorhabditis elegans Hypothetical
           protein ZK418.10 protein.
          Length = 293

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 474 YAQYFMTNISDHPCVNNKCNTPE*YLY*NIERRVFKATHQNIS 346
           Y QY+   + +H C+ N+ N P  Y       ++ + THQ ++
Sbjct: 229 YQQYYSAALINHCCLTNQQNAPSRYSELLSLYQIIEETHQKVN 271


>AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotein
           related (146.8 kD)(pgp-14) protein.
          Length = 1327

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +2

Query: 20  HEVMDKIPDQIGYLVLTEDGAVLESGGELENDERIATIITD-LITLSNEVDSVAFGPSEN 196
           H+ ++K+P   GY  L  DG V  SGG+ +      T+I D  + L +E  S     SE+
Sbjct: 547 HDFIEKMPK--GYDTLIGDGGVQLSGGQKQRVAIARTLIRDPKVLLLDEATSALDAQSES 604


>Z82086-2|CAB04995.2|  309|Caenorhabditis elegans Hypothetical
           protein ZK228.3 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 131 IITDLITLSNEVDSVAFGPSENFKKISITFDDHWYIICLSNKK 259
           +   LI LS E++  A  P + ++  S  FD++W+I  +  +K
Sbjct: 11  VFDQLINLSGELNGWAHQPYD-YRFYSENFDEYWFIAVVDKEK 52


>U23514-8|AAC46540.2|  467|Caenorhabditis elegans Hypothetical
           protein F48E8.2 protein.
          Length = 467

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 19/74 (25%), Positives = 31/74 (41%)
 Frame = +2

Query: 5   AAGIRHEVMDKIPDQIGYLVLTEDGAVLESGGELENDERIATIITDLITLSNEVDSVAFG 184
           AA +R    +K+ D   YL       V +S  ++ +D+ + T +  L  +  EV   AFG
Sbjct: 21  AATMRRLAFEKMDDDY-YLGGAVGDEVFDSEDDVSSDDEVKTHLRKLAGIEKEVTKDAFG 79

Query: 185 PSENFKKISITFDD 226
                 +     DD
Sbjct: 80  RRRRRSEFEDDMDD 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,134,272
Number of Sequences: 27780
Number of extensions: 246621
Number of successful extensions: 503
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)