Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1051
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    28   1.4  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    27   1.9  
SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|c...    27   3.3  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   4.3  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    26   4.3  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.7  
SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr...    26   5.7  
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    25   7.5  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    25   7.5  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   7.5  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   7.5  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    25   9.9  

>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
 Frame = +2

Query: 206 ETDKEVWP---LNQPVPKLEVLVQCSGEAVFANDLPKQSSEVFGAFVTADTTPGSIIKDF 376
           E D E +P      P   +E     +G   FA+ L   SS   GAF  A     +   DF
Sbjct: 248 EVDSERFPSVDFEDPSLLMENQQNITGTGSFADYLQPPSSGSLGAFTNASPGESNTGIDF 307

Query: 377 DTEEAFKIPGV 409
           DT+     P V
Sbjct: 308 DTDNTNLNPSV 318


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = +3

Query: 327 VHSLQQTQRPEVLLRILIPKKLSKYLELLLFTQ 425
           + SL++     ++LR+L+PK +++   +LLF+Q
Sbjct: 863 MRSLEEASCKFLILRLLVPKLITRGHRILLFSQ 895


>SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 186

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 137 INPIYKSGGEVIKRSVSHGTQSFETDKEVWPLNQPVP 247
           +NP+YK    + ++++ +   + ET K +  L   VP
Sbjct: 18  LNPVYKGAEHLCRKNIHNQVYNVETGKTIQILQDLVP 54


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 513  TVFSHSNSSFSIANGIDIGTKELM 442
            TV++ SN   ++ N +DIG K+L+
Sbjct: 1265 TVYADSNEPNAVLNDLDIGLKDLI 1288


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 585 LSKSNMILSTKKNPY*PLTKSSIPPN 662
           L K++ + S+  NPY P    ++PPN
Sbjct: 276 LQKNHPVQSSNFNPYTPAPSITVPPN 301


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
 Frame = -2

Query: 472 WNRYWYKGVN--AWYVFG 425
           WN YWYK ++  +W +FG
Sbjct: 260 WNPYWYKMMDNPSWELFG 277


>SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 23/75 (30%), Positives = 35/75 (46%)
 Frame = +3

Query: 366 LRILIPKKLSKYLELLLFTQPKTYQALTPLYQYLFHLL*KTKNYYAKKQLNITVNLQP*L 545
           L++ +  K SK +   + T P  Y+  T  Y Y   L  +  N YA   L+   +     
Sbjct: 176 LQLYVDNKPSKEI---VSTYPNVYKMCTKNY-YTRLLFPEFPNVYAFNDLSFHFHDAQSF 231

Query: 546 *QIEKKQPTKLLDLS 590
             +EKKQP+K +D S
Sbjct: 232 --VEKKQPSKFVDAS 244


>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
 Frame = +2

Query: 146 IYKSGGEVIKRSVSHGTQSF-ETDKEVWPLNQPVPKLEVLVQCSGEAVFANDLPKQSSEV 322
           I  +GG     ++++G     + +K   P NQ V   ++ VQ    A+ A DLP   SEV
Sbjct: 187 IILAGGAQAIAAMAYGISGVPKVNKIFGPGNQFVTAAKMHVQNDYGALVAIDLPAGPSEV 246

Query: 323 FGAFVTADTT--PGSIIKDFDTEEAFKIPGVIAFYTAKNIP 439
               V AD T  P S+  D  ++    +   I   T    P
Sbjct: 247 ---LVIADETCNPESVALDLLSQAEHGLDSQIILLTVSLSP 284


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 555 EKKQPTKLLDLSKSNMILSTKKNPY 629
           EK +PT++LD +K+N   +T+  PY
Sbjct: 23  EKAEPTQVLDAAKANK--NTRSYPY 45


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +2

Query: 68   AAYRKMLALALYYKAILSLSSES--INPIYKSGGEVIKRSVSHGTQSFETDKEVWPLNQP 241
            A YR +  +   +++I+  + E+  I+P+  S  E +  ++ + T  F   + V+P+ Q 
Sbjct: 1128 ADYRGINEILNCWESIIKTTHENAIISPVGSSPVEAVSSTLKNLTLRFSQSENVFPIEQI 1187

Query: 242  VPKLE-VLVQCSGEAV 286
            +   E       GEAV
Sbjct: 1188 IDITERYAFDQQGEAV 1203


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 149 ILDLLIQSLNLRLPCNTKPMLTFFYTPQTAQGAF 48
           + D+L    N R   N   +L F +TP+T   AF
Sbjct: 109 LFDILSARTNKRGQINLNHLLNFQFTPRTNSNAF 142


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 564 QPTKLLDLSKSNMILSTKKNPY 629
           +PTKLLDL+ ++  LS K+  +
Sbjct: 528 RPTKLLDLASASSCLSKKETDF 549


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,471
Number of Sequences: 5004
Number of extensions: 57721
Number of successful extensions: 165
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)