Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG1050
(674 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 60 3e-10
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 50 4e-07
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 42 8e-05
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 39 6e-04
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 39 8e-04
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 32 0.087
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 32 0.087
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 28 1.1
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 3.3
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 27 3.3
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 26 4.3
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 26 5.7
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 25 7.6
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 25 7.6
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 7.6
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 25 10.0
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 25 10.0
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 25 10.0
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 60.1 bits (139), Expect = 3e-10
Identities = 35/118 (29%), Positives = 57/118 (48%)
Frame = +3
Query: 267 RRQQLKNLLRMYEENQNVMVEALHKDLRRSKMEAILLEVDYLINDLRNTLHYLDEWTKPE 446
RR LK L NQ+ E KD ++ ++A E+ + + TL ++ +P
Sbjct: 49 RRNFLKALKENIIRNQDKYAEIACKDTGKTLVDAAFGEILVTLEKINWTLANGEQSLRPT 108
Query: 447 HPPKGFVNILDEVVIYNDPYGVVLVIGAWNYPLQLLLLPMAGAIAAGNTVIVKPSELS 620
P + + +P GV+ + +WNYPL L P+ A+ AGN ++VK SEL+
Sbjct: 109 KRPNSLLTSYKGGYVKYEPLGVIAALVSWNYPLHNALGPIISALFAGNAIVVKGSELT 166
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 49.6 bits (113), Expect = 4e-07
Identities = 23/49 (46%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Frame = +3
Query: 501 PYGVVLVIGAWNYPLQLLLLPMAGAIAAGNTVIVKPSELSV-ACSNFVV 644
P GV+ VI WN+PL++ L + AIA+GN V++KPSEL+ +C F +
Sbjct: 162 PRGVIGVITPWNFPLKMALWKLVPAIASGNCVVLKPSELAPWSCLEFAL 210
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 41.9 bits (94), Expect = 8e-05
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +3
Query: 468 NILDEVVIYNDPYGVVLVIGAWNYPLQLLLLPMAGAIAAGNTVIVKPS 611
N + ++ P GVV +I WN+P ++ + A+AAG TV+++P+
Sbjct: 148 NPQNRIITIKQPVGVVGIITPWNFPAAMITRKVGAALAAGCTVVIRPA 195
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 39.1 bits (87), Expect = 6e-04
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +3
Query: 495 NDPYGVVLVIGAWNYPLQLLLLPMAGAIAAGNTVIVKPSELS 620
++P GV I WN+P + +A A+A GNT+I+K +EL+
Sbjct: 158 HEPIGVCGQIIPWNFPFLMCAWKIAPAVACGNTIILKTAELT 199
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 38.7 bits (86), Expect = 8e-04
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +3
Query: 501 PYGVVLVIGAWNYPLQLLLLPMAGAIAAGNTVIVKPSE 614
P GV I WNYPL + +A A+AAGN +I+K +E
Sbjct: 154 PIGVCGQIVPWNYPLNMAGWKIAPALAAGNCIIIKSAE 191
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 31.9 bits (69), Expect = 0.087
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 483 VVIYNDPYGVVLVIGAWNYPLQLLLLPMAGAIAAGNTVIVKPS 611
++ P GV +I WN+P ++ A+AAG T I P+
Sbjct: 148 LISIKQPVGVSALITPWNFPAAMIARKGGAALAAGCTAIFLPA 190
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 31.9 bits (69), Expect = 0.087
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Frame = +3
Query: 210 AVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNVMVEALHKDLRRSKMEAILLEVDY 389
AVQK + R P+ RQ +NL + ++N + + + KDL + ++ + + V
Sbjct: 9 AVQKRKKQKQRSVVDPVTRERQLKRNLADLEKDNFSDIRFEIPKDLLQRRV--LPISVRR 66
Query: 390 LINDLRNTLHYLDEW---------TKPEH-PPKGFVNI 473
+++ + ++YLDE KP + PP+ F N+
Sbjct: 67 ILSSRKTFVNYLDETPNSRYNTCVAKPSYKPPRKFCNV 104
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 285 NLLRMYEENQNVMVEALHKDLRRSKMEAILLEVDYLINDLRNTL 416
+LL++Y + +E + KDL RS E + + IN LRN L
Sbjct: 249 HLLKVYSGQTSFSLEEIEKDLGRSLPEYPAYQNEEGINALRNVL 292
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 177 TSKQKTMSAAEAVQKARDTFNRGTTRPIEWRRQQLKNL 290
TSK T SAA+ K + + T++PI +++ L
Sbjct: 202 TSKPATTSAAQPSSKVEENMAKATSQPITTAEKEIPEL 239
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -1
Query: 608 GFHDNRVPGSDGSGHRQKQQLQGIVPGAYYEDDA 507
GFH RVP SD +G +Q+QQ + V A+ + A
Sbjct: 564 GFHVVRVP-SDAAGFQQRQQQEEGVLEAHTNESA 596
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 553 SSCKG*FQAPITRTTPYGSLYITTSSRMFTK 461
S K F+ I +TTPYGS T S ++ TK
Sbjct: 220 SKLKNNFRGIIYKTTPYGSCNDTESLQVDTK 250
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 163 TGILQHPNKRRCQLLRPSKKLETLSIAAQPGR*NGAVSSSRI 288
+G+LQ +KR P K ++ S QP R +GA S++ +
Sbjct: 138 SGLLQSKDKRSQSPHSPKKPVKNSSSRDQPVRNSGATSTASL 179
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 279 LKNLLRMYEENQNVMVEALHKDLRRSK-MEAILLEVDYLIND 401
LKNLL + +++ EAL+K L +K + +L E + LIN+
Sbjct: 255 LKNLLEVKDKDVEGRNEALNKILHPAKNLVELLTEKENLINE 296
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -1
Query: 611 AGFHDNRVPGSDGSGHRQKQQLQGIVPG 528
+G H V G G+ H + +L G PG
Sbjct: 323 SGTHGTHVAGIIGANHPETPELNGAAPG 350
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 7.6
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 215 PKSSRHFQSRHNQADRMAP--SAAQEFVKNVRGKPKRHGGGPTQ 340
PKSS HF RH DR S ++ + +N K K+ GP Q
Sbjct: 492 PKSSHHFDERHG-GDRHEKNLSNSRRYSRNKFHK-KKQSSGPFQ 533
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 25.0 bits (52), Expect = 10.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 385 STSSRMASILLRLRSLCRASTMTFWFSSYIL 293
STSS M + L SL + +FW SSY L
Sbjct: 762 STSSMMKTWLCAKFSLKETNKTSFWHSSYNL 792
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 354 SKMEAILLEVDYLINDLRNTLHYLDEWTK 440
SKM I ++VDY+ DL YL ++ K
Sbjct: 243 SKMRRISIDVDYVDEDLNLINAYLSQFGK 271
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 25.0 bits (52), Expect = 10.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 327 EALHKDLRRSKMEAILLEVDYLIND 401
+ALH +R S + +L +Y+I D
Sbjct: 505 KALHPQVRHSNFQVLLTTYEYIIKD 529
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,311
Number of Sequences: 5004
Number of extensions: 53895
Number of successful extensions: 148
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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