Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1049
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   5.7  
SPAC30C2.05 |erv14||cornichon family protein Erv14|Schizosacchar...    25   7.5  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   10.0 
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    25   10.0 

>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 406  YLSFKQFCHMKIRKSNHFSSIRERTTNTQT 495
            YL+F+Q+ ++++  S+  S  R+  T  QT
Sbjct: 1464 YLTFRQYKYLRLDGSSKISQRRDMVTEWQT 1493


>SPAC30C2.05 |erv14||cornichon family protein
           Erv14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 112 SFI-YGSVMYLCYTFLRFSNNSFLDFTKIVCI 204
           SF+ +GS+ YL YTF R +  + L   +I C+
Sbjct: 2   SFVSWGSLNYLAYTFYRLNGANML--LQIFCV 31


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -1

Query: 123  VNKTVIKLFTTRIFICFY*KCK*IYF*SRLVSLSLVPATAW 1
            V+ T+  +F+T  F C Y   + +Y  + + S  ++P   W
Sbjct: 984  VSDTLKNMFSTSDFSCAYNSVEDLYAFTSMKSKEILPEVLW 1024


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +1

Query: 121 YGSVMYLCYTFLRFSNNSFLDFTKIVCI 204
           YG V++LC+  +  +++ F+D    +C+
Sbjct: 278 YGYVLWLCWCTMYLTHHYFVDLVGGMCL 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,982,497
Number of Sequences: 5004
Number of extensions: 37138
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)