Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1049
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79753-6|CAI91165.1|  218|Caenorhabditis elegans Hypothetical pr...    27   6.9  

>Z79753-6|CAI91165.1|  218|Caenorhabditis elegans Hypothetical
           protein F20G2.6b protein.
          Length = 218

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -3

Query: 214 NANKYKLFL*NQEKNYL--KTLKKCSKDTLQNRK*NCDQIVYYTHIYLFLLKM*INIFLI 41
           NANK KL   ++E+NY     ++ C ++ L + + +  +++    + +F L   + I ++
Sbjct: 16  NANKNKLRTSSEERNYADRSVVRVCHREVLGDDQMDMSRVLVIAPLVVFALFF-LTILML 74

Query: 40  ETSLSLPRARHR 5
            +  S+   R R
Sbjct: 75  RSFFSMRDKRRR 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,731,032
Number of Sequences: 27780
Number of extensions: 200201
Number of successful extensions: 355
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)