Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1047
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    30   0.21 
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.4  
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c...    25   6.0  
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    25   7.9  

>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 230 FSLLNTV*ILAVILFGIFCCSKLSYNQRKLNMYI*KKDKI 111
           FS++  + +   I+ G +C S   Y  R+   YI +K K+
Sbjct: 307 FSIVTIIYLFTTIVVGFYCISNFGYGLREYLRYIHQKQKV 346


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/57 (19%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +2

Query: 83  YVYMKCYCHKFCLFFIYTYLVFFDCM--IISNNKKYRIKLLPIFTRYSVMKIITLLF 247
           YVY    C+++  F    +L    CM  +   +  +++     ++ Y+++ + +L F
Sbjct: 44  YVYKIALCNEYIRFLAKCFLYILRCMSTVSLLSSAHKMNCCNFYSNYNILLVSSLFF 100


>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 200 AVILFGIFCCSKLSYNQRKLNMYI*KKDKIYDNNISC 90
           AV  FG+ CC+   ++     MY  K  ++Y N I C
Sbjct: 237 AVSGFGV-CCTMQIFDTVMTRMYNQKNKELYKNPIDC 272


>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 536 LTVFLNTIVRTSELVLHYLTMY 471
           +T FLN I   S+L+L+Y+ +Y
Sbjct: 93  VTSFLNVIEYWSQLILYYVPVY 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,986,445
Number of Sequences: 5004
Number of extensions: 37340
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)