Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG1047
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0556 - 11444512-11445577,11445730-11446007 33 0.12
04_03_0028 + 9698427-9698849,9698862-9699227 32 0.38
04_03_0075 + 10726807-10727721,10728756-10729496 31 0.50
10_05_0103 - 9186758-9187345,9187395-9187951,9188265-9188376 31 0.66
08_02_0117 + 12767502-12767588,12768846-12768908,12769299-12770741 31 0.87
07_03_0025 + 12587868-12588429,12591820-12592031,12592212-125926... 31 0.87
05_03_0619 + 16274255-16274396,16274775-16274848,16275111-162761... 31 0.87
02_03_0061 + 14582724-14582840,14583360-14584334 31 0.87
07_03_0046 + 12781335-12782073,12782254-12783014 30 1.1
08_02_0078 + 12001523-12001634,12002169-12002500,12002624-120027... 29 2.7
04_01_0502 - 6587068-6587964 29 3.5
11_08_0033 + 27820563-27823482,27823593-27823996 28 4.6
10_01_0340 - 3734116-3734178,3734212-3734300,3734785-3734844,373... 28 4.6
02_03_0007 - 13875735-13875826,13876217-13877465 28 6.1
>02_02_0556 - 11444512-11445577,11445730-11446007
Length = 447
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = -3
Query: 549 VTPEINSFFKHHSSNFGIGFTLFNYVCVLYNGIG*VLLYHIFNLW*FKI 403
VTP IN FFKH + N GF + V + + VL +H+F + F I
Sbjct: 115 VTP-INKFFKHPNGNIIEGFRIIQDVPICFEDREAVLDFHVFEIQDFDI 162
>04_03_0028 + 9698427-9698849,9698862-9699227
Length = 262
Score = 31.9 bits (69), Expect = 0.38
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = -3
Query: 549 VTPEINSFFKHHSSNFGIGFTLFNYVCVLYNGIG*VLLYHIFNL 418
+TP + FFKH + N GF + V V+++G+ +L +H+F +
Sbjct: 95 ITPT-DKFFKHPNGNIIEGFGVVQDVPVIHDGMEAILDFHVFEV 137
>04_03_0075 + 10726807-10727721,10728756-10729496
Length = 551
Score = 31.5 bits (68), Expect = 0.50
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -3
Query: 549 VTPEINSFFKHHSSNFGIGFTLFNYVCVLYNGIG*VLLYHIFNLW*FKI 403
+TP N FFKH + N GF + V V + VL +H+F + F I
Sbjct: 166 ITPT-NKFFKHPNGNIIEGFGIVQDVPVFFENKEAVLDFHVFEIHDFDI 213
>10_05_0103 - 9186758-9187345,9187395-9187951,9188265-9188376
Length = 418
Score = 31.1 bits (67), Expect = 0.66
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -3
Query: 549 VTPEINSFFKHHSSNFGIGFTLFNYVCVLYNGIG*VLLYHIFNLW*FKI 403
VTP N FFKH + N GF + V V + +L +H+F + F I
Sbjct: 252 VTPT-NKFFKHPNGNIIEGFGIVQDVPVCFENREAILDFHVFEIQDFDI 299
>08_02_0117 + 12767502-12767588,12768846-12768908,12769299-12770741
Length = 530
Score = 30.7 bits (66), Expect = 0.87
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = -3
Query: 549 VTPEINSFFKHHSSNFGIGFTLFNYVCVLYNGIG*VLLYHIFNLW*FKI 403
VTP N FFKH + N GF + V V + +L +HIF + F I
Sbjct: 318 VTPT-NKFFKHPNGNIIGGFGIVQDVPVCFEDREAILDFHIFEIQGFDI 365
>07_03_0025 +
12587868-12588429,12591820-12592031,12592212-12592603,
12592608-12592965
Length = 507
Score = 30.7 bits (66), Expect = 0.87
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 534 NSFFKHHSSNFGIGFTLFNYVCVLYNGIG*VLLYHIFNLW*FKI 403
N FFKH + N GF + V V + + +L +H+F + F I
Sbjct: 65 NKFFKHPNGNIIEGFGIVQDVPVCFEDMEAILDFHVFEIQDFDI 108
>05_03_0619 +
16274255-16274396,16274775-16274848,16275111-16276139,
16276484-16276702,16277228-16277250,16277482-16277606,
16279480-16279670,16280202-16280360,16281359-16281598
Length = 733
Score = 30.7 bits (66), Expect = 0.87
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -3
Query: 549 VTPEINSFFKHHSSNFGIGFTLFNYVCVLYNGIG*VLLYHIFNLW*FKI 403
+TP + FFKH + N GF + V V+ +G +L +H+F + F +
Sbjct: 161 ITPT-DKFFKHPNGNIIEGFGVVQDVLVINDGKEAILDFHVFEVQDFNV 208
>02_03_0061 + 14582724-14582840,14583360-14584334
Length = 363
Score = 30.7 bits (66), Expect = 0.87
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -3
Query: 549 VTPEINSFFKHHSSNFGIGFTLFNYVCVLYNGIG*VLLYHIFNLW*FKI 403
VTP N FFKH + N GF + V V + +L +H+F + F I
Sbjct: 202 VTPT-NKFFKHPNGNIIEGFGIVQDVPVCFEDKEAILDFHVFEIQDFDI 249
>07_03_0046 + 12781335-12782073,12782254-12783014
Length = 499
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -3
Query: 549 VTPEINSFFKHHSSNFGIGFTLFNYVCVLYNGIG*VLLYHIFNLW*FKI 403
+TP N FFKH + N GF + V V + +L +H+F + F I
Sbjct: 277 ITPT-NKFFKHPNGNIIEGFGIVQDVHVCFEDREAILDFHVFGIQDFDI 324
>08_02_0078 +
12001523-12001634,12002169-12002500,12002624-12002791,
12002904-12003311
Length = 339
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 534 NSFFKHHSSNFGIGFTLFNYVCVLYNGIG*VLLYHIFNLW*FKI 403
N FFKH + N GF + V + + +L +HIF + F I
Sbjct: 158 NKFFKHPNGNIIEGFGIVQDVPICFEDREAILDFHIFEIQDFDI 201
>04_01_0502 - 6587068-6587964
Length = 298
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -3
Query: 549 VTPEINSFFKHHSSNFGIGFTLFNYVCVLYNGIG*VLLYHIFNLW*FKI 403
VTP N FFKH + N GF + V V + VL +++F + F I
Sbjct: 184 VTPT-NKFFKHPNGNIIEGFGIVQDVPVYFEDRKAVLDFYVFEIQDFDI 231
>11_08_0033 + 27820563-27823482,27823593-27823996
Length = 1107
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -1
Query: 206 ILAVILFGIFCCSKLSYNQRKLNMYI*KKDKIYDNNISCTR 84
++AV G+ CCS + ++N + K +I + ++CT+
Sbjct: 1065 LVAVFELGLMCCSNSPAERMEINDVVVKLKRIRKDYLTCTK 1105
>10_01_0340 -
3734116-3734178,3734212-3734300,3734785-3734844,
3736188-3736245,3736507-3736893,3736942-3737615,
3739154-3739203,3739903-3739943,3740721-3740860,
3740903-3741183,3741405-3741613
Length = 683
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 534 NSFFKHHSSNFGIGFTLFNYVCVLYNGIG*VLLYHIFNL 418
N FFKH + N GF + V V + VL +H+F +
Sbjct: 500 NKFFKHPNGNIIEGFGIVQDVPVYFEDREAVLDFHVFEI 538
>02_03_0007 - 13875735-13875826,13876217-13877465
Length = 446
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -3
Query: 558 ELNVTPEINSFFKHHSSNFGIGFTLFNYVCVLYNGIG*VLLYHIFNLW*FKI 403
++ VT + FFKH + N GF + V V + +L +HIF + F I
Sbjct: 162 DMTVT-STDKFFKHPNGNIIEGFGIVQDVHVCFEDREAILDFHIFEIQDFDI 212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,481,163
Number of Sequences: 37544
Number of extensions: 164650
Number of successful extensions: 255
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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